microbiomeutil-data_20101212+dfsg1-2_all.deb


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Description

microbiomeutil-data - Reference 16S sequences and NAST-alignments used by microbiomeutil tools

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename microbiomeutil-data_20101212+dfsg1-2_all.deb
Package name microbiomeutil-data
Package version 20101212+dfsg1
Package release 2
Package architecture all
Package type deb
Category science
Homepage http://microbiomeutil.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 2.20 MB
Installed size 50.53 MB
Reference data for tools in the microbiomeutil package.  The algorithms
used by the tools chimeraslayer, nast-ier and wigeon are based on
reference data which are provided by this package.

Alternatives

Package Version Architecture Repository
microbiomeutil-data_20101212+dfsg1-2_all.deb 20101212+dfsg1 all Debian Main
microbiomeutil-data - - -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package microbiomeutil-data_20101212+dfsg1-2_all.deb
Source Package microbiomeutil

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install microbiomeutil-data deb package:
    # sudo apt-get install microbiomeutil-data

Files

Path
/usr/share/doc/microbiomeutil-data/README
/usr/share/doc/microbiomeutil-data/README.test
/usr/share/doc/microbiomeutil-data/changelog.Debian.gz
/usr/share/doc/microbiomeutil-data/copyright
/usr/share/doc/microbiomeutil-data/examples/run-unit-test
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/Makefile
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.align.gz
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.gz
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.wTaxons.gz
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.cidx
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.gz
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.cidx
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/runMe.sh
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/Makefile
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/query_seq.fasta
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/runMe.sh
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/template_seqs.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/testForUtils.pl
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/tmp.both.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/tmp.both.NAST.malign.gz
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/tmp.mb_select.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/NAST-iEr/tmp.query.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/WigeoN/Makefile
/usr/share/doc/microbiomeutil-data/examples/WigeoN/chims.NAST.WigeoN
/usr/share/doc/microbiomeutil-data/examples/WigeoN/chims.NAST.gz
/usr/share/doc/microbiomeutil-data/examples/WigeoN/runMe.sh
/usr/share/microbiomeutil-data/RESOURCES/README
/usr/share/microbiomeutil-data/RESOURCES/genus_counter.pl
/usr/share/microbiomeutil-data/RESOURCES/genus_counts
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta.nhr
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta.nin
/usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta.nsq

Changelog

2018-07-05 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Andreas Tille ]
* Remove unneeded get-orig-source target
* Remove Tim Booth from Uploaders (thanks for your work, Tim)
* Secure URI in watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* hardening=+all
2016-01-20 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-1) unstable; urgency=low
* debian/copyright: s/BSD-like/BSD-3-clause/
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Cleanup d/rules
* Fix build time tests and run these
* Add doc-base file
* d/watch: add missing repacksuffix
* Moved packaging from SVN to Git
* Cleaning up log files from past test runs
* Add autopkgtest
2013-07-22 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg-1) unstable; urgency=low
* Initial release to Debian (Closes: #711086)
* Remove copyrighted logo images from upstream tarball (the logo is
only used in very short doc which works perfectly without this image)
* debian/control: Use anonscm Vcs addresses
2013-06-05 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu8) precise; urgency=low
* Bio-Linux rebuild with Andreas' fixes  
* ChimeraSlayer run from QIIME was not working.  Need to pre-compute
index files and add them to RESOURCES directory
* Also added missing direct dep on blast2
2013-06-04 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212-2) unstable; urgency=low
* debian/copyright: DEP5 copyright
* debian/control:
- Added myself to uploaders
- Priority: optional (as per Debian Med policy)
- Droped DM-Upload-Allowed
- Standards-Version: 3.9.4
- Debhelper 9 (also d/compat)
- Dropped explicit quilt Build-Dependends
- better formatting
- Enhance long descriptions
* debian/rules:
- remove "--with quilt" because this is specified in source format
- Use xz compression for binaries
* debian/rules, debian/*.install, debian/*.links:
Rather use the usual debhelper input files
* Remove unneeded debian/README.* files and create debian/upstream
file with citation information
* Removed debian/{ChimeraSlayer,microbiomeutil.install} because
unneeded
* debian/*.1: Wrote manpages
* debian/microbiomeutil.links: Synonyms with camel case spelling
as in the provided documentation
* debian/patches/hardening.patch: Enable propagation of hardening options
2013-06-03 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu6) lucid; urgency=low
* Another patch needed to Perl code due to inappropriate use of
FindBin 
* Move to /usr/lib rather than /usr/share as per Lintian warnings.
* Set --with quilt on dh.  (Possibly not needed now?)
* Added better descriptions in debian/control
2011-04-11 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu1) lucid; urgency=low
* Split package into 4 binary packages.
2011-03-30 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-1) UNRELEASED; urgency=low
* New upstream
2010-12-02 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-02-1) UNRELEASED; urgency=low
* Initial packaging

See Also

Package Description
microbiomeutil_20101212+dfsg1-2_all.deb Microbiome Analysis Utilities
microcom_2017.03.0-2_i386.deb minimalistic terminal program
microdc2_0.15.6-4+b1_i386.deb command-line based Direct Connect client
microhope_4.4.4+dfsg-4_i386.deb hardware & software framework to learn microcontrollers
micropolis-data_0.0.20071228-9_all.deb real-time city management simulator - data
micropolis_0.0.20071228-9_i386.deb real-time city management simulator
midge_0.2.41-2.1_all.deb A text to MIDI program
midicsv_1.1+dfsg.1-1+b1_i386.deb translate MIDI file to CSV
mididings-doc_0~20120419~ds0-6_all.deb mididings Documentation
mididings_0~20120419~ds0-6_all.deb MIDI router and processor based on Python
midish_1.0.4-1.1+b3_i386.deb shell-like MIDI sequencer/filter
midisnoop_0.1.2~repack0-7+b1_i386.deb MIDI monitor and prober
midori_7.0-2_i386.deb fast, lightweight graphical web browser
mig_1.8-4_i386.deb GNU Mach Interface Generator
migemo-el_1.2+gh0.20150404-7_all.deb transitional dummy package: elpa-migemo
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