melting_5.2.0-1_all.deb


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Description

melting - compute the melting temperature of nucleic acid duplex

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename melting_5.2.0-1_all.deb
Package name melting
Package version 5.2.0
Package release 1
Package architecture all
Package type deb
Category field::biology field::biology:bioinformatics field::biology:molecular implemented-in::c interface::commandline role::program science scope::utility suite::gnu use::analysing works-with-format::plaintext works-with::TODO
Homepage http://www.ebi.ac.uk/compneur-srv/melting/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 3.50 MB
Installed size 5.18 MB
This program computes, for a nucleic acid duplex, the enthalpy, the
entropy and the melting temperature of the helix-coil
transitions. Three types of hybridisation are possible: DNA/DNA,
DNA/RNA, and RNA/RNA. The program first computes the hybridisation
enthalpy and entropy from the elementary parameters of each Crick's
pair by the nearest-neighbor method. Then the melting temperature is
computed. The set of thermodynamic parameters can be easily changed,
for instance following an experimental breakthrough.

Alternatives

Package Version Architecture Repository
melting_5.2.0-1_all.deb 5.2.0 all Debian Main
melting - - -

Requires

Name Value
default-jre -
java-runtime -
java-wrappers -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package melting_5.2.0-1_all.deb
Source Package melting

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install melting deb package:
    # sudo apt-get install melting

Files

Path
/usr/bin/melting
/usr/share/doc-base/melting
/usr/share/doc/melting/README
/usr/share/doc/melting/README.Debian
/usr/share/doc/melting/changelog.Debian.gz
/usr/share/doc/melting/changelog.gz
/usr/share/doc/melting/copyright
/usr/share/doc/melting/melting.html
/usr/share/doc/melting/melting.pdf.gz
/usr/share/doc/melting/DeveloppersGuide/DeveloppersGuide.css
/usr/share/doc/melting/DeveloppersGuide/WARNINGS
/usr/share/doc/melting/DeveloppersGuide/index.html
/usr/share/doc/melting/DeveloppersGuide/labels.pl
/usr/share/doc/melting/DeveloppersGuide/node1.html
/usr/share/doc/melting/DeveloppersGuide/node10.html
/usr/share/doc/melting/DeveloppersGuide/node11.html
/usr/share/doc/melting/DeveloppersGuide/node12.html
/usr/share/doc/melting/DeveloppersGuide/node13.html
/usr/share/doc/melting/DeveloppersGuide/node14.html
/usr/share/doc/melting/DeveloppersGuide/node15.html
/usr/share/doc/melting/DeveloppersGuide/node16.html
/usr/share/doc/melting/DeveloppersGuide/node17.html
/usr/share/doc/melting/DeveloppersGuide/node18.html
/usr/share/doc/melting/DeveloppersGuide/node19.html
/usr/share/doc/melting/DeveloppersGuide/node2.html
/usr/share/doc/melting/DeveloppersGuide/node20.html
/usr/share/doc/melting/DeveloppersGuide/node21.html
/usr/share/doc/melting/DeveloppersGuide/node22.html
/usr/share/doc/melting/DeveloppersGuide/node23.html
/usr/share/doc/melting/DeveloppersGuide/node24.html
/usr/share/doc/melting/DeveloppersGuide/node25.html
/usr/share/doc/melting/DeveloppersGuide/node26.html
/usr/share/doc/melting/DeveloppersGuide/node27.html
/usr/share/doc/melting/DeveloppersGuide/node28.html
/usr/share/doc/melting/DeveloppersGuide/node29.html
/usr/share/doc/melting/DeveloppersGuide/node3.html
/usr/share/doc/melting/DeveloppersGuide/node30.html
/usr/share/doc/melting/DeveloppersGuide/node4.html
/usr/share/doc/melting/DeveloppersGuide/node5.html
/usr/share/doc/melting/DeveloppersGuide/node6.html
/usr/share/doc/melting/DeveloppersGuide/node7.html
/usr/share/doc/melting/DeveloppersGuide/node8.html
/usr/share/doc/melting/DeveloppersGuide/node9.html
/usr/share/doc/melting/html/1x2InternalLoop.png
/usr/share/doc/melting/html/Azobenzene.png
/usr/share/doc/melting/html/CNG.png
/usr/share/doc/melting/html/DNAApproximativeMode.png
/usr/share/doc/melting/html/DNAInosine.png
/usr/share/doc/melting/html/DNALongDanglingEnd.png
/usr/share/doc/melting/html/DNAPerfectlyMatching.png
/usr/share/doc/melting/html/DNARNA.png
/usr/share/doc/melting/html/DNARNAApproximativeMode.png
/usr/share/doc/melting/html/DNARNASingleMismatch.png
/usr/share/doc/melting/html/DNASelfComplementarity.png
/usr/share/doc/melting/html/DNASingleBulgeLoop.png
/usr/share/doc/melting/html/DNASingleDanglingEnd.png
/usr/share/doc/melting/html/DNASingleMismatch.png
/usr/share/doc/melting/html/DNATandemMismatch.png
/usr/share/doc/melting/html/GUBasePairs.png
/usr/share/doc/melting/html/Hydroxyadenine.png
/usr/share/doc/melting/html/LockedNucleicAcid.png
/usr/share/doc/melting/html/RNAApproximativeMode.png
/usr/share/doc/melting/html/RNAInosine.png
/usr/share/doc/melting/html/RNALongDanglingEnd.png
/usr/share/doc/melting/html/RNAPerfectlyMatching.png
/usr/share/doc/melting/html/RNASecondDanglingEnd.png
/usr/share/doc/melting/html/RNASelfComplementarity.png
/usr/share/doc/melting/html/RNASingleBulgeLoop.png
/usr/share/doc/melting/html/RNASingleDanglingEnd.png
/usr/share/doc/melting/html/RNASingleMismatch.png
/usr/share/doc/melting/html/RNATandemMismatch.png
/usr/share/doc/melting/html/SingleMismatchLockedNucleicAcid.png
/usr/share/doc/melting/html/TandemLockedNucleicAcids.png
/usr/share/doc/melting/html/WARNINGS.gz
/usr/share/doc/melting/html/images.aux
/usr/share/doc/melting/html/images.bbl.gz
/usr/share/doc/melting/html/images.log.gz
/usr/share/doc/melting/html/images.pl.gz
/usr/share/doc/melting/html/images.tex.gz
/usr/share/doc/melting/html/img1.png
/usr/share/doc/melting/html/img10.png
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/usr/share/doc/melting/html/img99.png
/usr/share/doc/melting/html/index.html
/usr/share/doc/melting/html/internals.pl.gz
/usr/share/doc/melting/html/labels.pl.gz
/usr/share/doc/melting/html/mRNARNA.png
/usr/share/doc/melting/html/melting.css
/usr/share/doc/melting/html/missfont.log
/usr/share/doc/melting/html/nx_grp_g.png
/usr/share/doc/melting/html/prev_g.png
/usr/share/doc/melting/html/up_g.png
/usr/share/doc/melting/images/1x2InternalLoop.eps.gz
/usr/share/doc/melting/images/1x2InternalLoop.png
/usr/share/doc/melting/images/Azobenzene.eps.gz
/usr/share/doc/melting/images/Azobenzene.png
/usr/share/doc/melting/images/CNG.eps.gz
/usr/share/doc/melting/images/CNG.png
/usr/share/doc/melting/images/DNAApproximativeMode.eps.gz
/usr/share/doc/melting/images/DNAApproximativeMode.png
/usr/share/doc/melting/images/DNAInosine.eps.gz
/usr/share/doc/melting/images/DNAInosine.png
/usr/share/doc/melting/images/DNAInosineOld.eps.gz
/usr/share/doc/melting/images/DNAInosineOld.png
/usr/share/doc/melting/images/DNALongDanglingEnd.eps.gz
/usr/share/doc/melting/images/DNALongDanglingEnd.png
/usr/share/doc/melting/images/DNAPerfectlyMatching.eps.gz
/usr/share/doc/melting/images/DNAPerfectlyMatching.png
/usr/share/doc/melting/images/DNARNA.eps.gz
/usr/share/doc/melting/images/DNARNA.png
/usr/share/doc/melting/images/DNARNAApproximativeMode.eps.gz
/usr/share/doc/melting/images/DNARNAApproximativeMode.png
/usr/share/doc/melting/images/DNARNASingleMismatch.eps.gz
/usr/share/doc/melting/images/DNARNASingleMismatch.png
/usr/share/doc/melting/images/DNASelfComplementarity.eps.gz
/usr/share/doc/melting/images/DNASelfComplementarity.png
/usr/share/doc/melting/images/DNASingleBulgeLoop.eps.gz
/usr/share/doc/melting/images/DNASingleBulgeLoop.png
/usr/share/doc/melting/images/DNASingleBulgeLoopOld.eps.gz
/usr/share/doc/melting/images/DNASingleBulgeLoopOld.png
/usr/share/doc/melting/images/DNASingleDanglingEnd.eps.gz
/usr/share/doc/melting/images/DNASingleDanglingEnd.png
/usr/share/doc/melting/images/DNASingleDanglingEndOld.eps.gz
/usr/share/doc/melting/images/DNASingleDanglingEndOld.png
/usr/share/doc/melting/images/DNASingleMismatch.eps.gz
/usr/share/doc/melting/images/DNASingleMismatch.png
/usr/share/doc/melting/images/DNATandemMismatch.eps.gz
/usr/share/doc/melting/images/DNATandemMismatch.png
/usr/share/doc/melting/images/GUBasePairs.eps.gz
/usr/share/doc/melting/images/GUBasePairs.png
/usr/share/doc/melting/images/GUBasePairsOld.eps.gz
/usr/share/doc/melting/images/GUBasePairsOld.png
/usr/share/doc/melting/images/Hydroxyadenine.eps.gz
/usr/share/doc/melting/images/Hydroxyadenine.png
/usr/share/doc/melting/images/LockedNucleicAcid.eps.gz
/usr/share/doc/melting/images/LockedNucleicAcid.png
/usr/share/doc/melting/images/RNAApproximativeMode.eps.gz
/usr/share/doc/melting/images/RNAApproximativeMode.png
/usr/share/doc/melting/images/RNAInosine.eps.gz
/usr/share/doc/melting/images/RNAInosine.png
/usr/share/doc/melting/images/RNALongDanglingEnd.eps.gz
/usr/share/doc/melting/images/RNALongDanglingEnd.png
/usr/share/doc/melting/images/RNAPerfectlyMatching.eps.gz
/usr/share/doc/melting/images/RNAPerfectlyMatching.png
/usr/share/doc/melting/images/RNAPerfectlyMatchingOld.eps.gz
/usr/share/doc/melting/images/RNAPerfectlyMatchingOld.png
/usr/share/doc/melting/images/RNASecondDanglingEnd.eps.gz
/usr/share/doc/melting/images/RNASecondDanglingEnd.png
/usr/share/doc/melting/images/RNASelfComplementarity.eps.gz
/usr/share/doc/melting/images/RNASelfComplementarity.png
/usr/share/doc/melting/images/RNASingleBulgeLoop.eps.gz
/usr/share/doc/melting/images/RNASingleBulgeLoop.png
/usr/share/doc/melting/images/RNASingleDanglingEnd.eps.gz
/usr/share/doc/melting/images/RNASingleDanglingEnd.png
/usr/share/doc/melting/images/RNASingleMismatch.eps.gz
/usr/share/doc/melting/images/RNASingleMismatch.png
/usr/share/doc/melting/images/RNATandemMismatch.eps.gz
/usr/share/doc/melting/images/RNATandemMismatch.png
/usr/share/doc/melting/images/SingleMismatchLockedNucleicAcid.eps.gz
/usr/share/doc/melting/images/SingleMismatchLockedNucleicAcid.png
/usr/share/doc/melting/images/TandemLockedNucleicAcids.eps.gz
/usr/share/doc/melting/images/TandemLockedNucleicAcids.png
/usr/share/doc/melting/images/mRNARNA.eps.gz
/usr/share/doc/melting/images/mRNARNA.png
/usr/share/java/melting5-5.2.0.jar
/usr/share/java/melting5.jar
/usr/share/man/man1/melting.1.gz

Changelog

2018-10-28 - Andreas Tille <tille@debian.org>
melting (5.2.0-1) unstable; urgency=medium
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Andreas Tille ]
* New upstream version (new packaging since its a totally new
program written in Java)
2017-11-15 - Andreas Tille <tille@debian.org>
melting (4.3.1+dfsg-3) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
2016-01-22 - Andreas Tille <tille@debian.org>
melting (4.3.1+dfsg-2) unstable; urgency=medium
* Moved debian/upstream to debian/upstream/metadata
* Removed outdated d/README.source
* Adapt to new uscan
* cme fix dpkg-control
* Spelling fixes in manpage
* Drop menu file for melting-gui since there is a desktop-file
2013-08-11 - Andreas Tille <tille@debian.org>
melting (4.3.1+dfsg-1) unstable; urgency=low
[ Thorsten Alteholz ]
* new upstream version
* debian/watch: new syntax
* debian/control: bump standard to 3.9.4 (no changes)
[ Andreas Tille ]
* debian/control:
- cme fix dpkg-control
- anonscm for Vcs fields
* debian/copyright: Add Files-Excluded
* debian/watch: handle +dfsg suffix
* debian/patch/hardening.patch: propagate hardening options
2012-04-03 - Andreas Tille <tille@debian.org>
melting (4.3c-2) unstable; urgency=low
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream
* debian/source/format: 3.0 (quilt)
* debian/upstream: Moved DOI+PMID to references
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
* debian/changelog: Fixed DEP5 and verified using
cme fix dpkg-copyright
* debian/references: removed because content is now in
debian/upstream
* debhelper 9 (control+compat)
* debian/rules: rewritten to use short dh
2009-11-20 - Charles Plessy <plessy@debian.org>
melting (4.3c-1) unstable; urgency=low
* New upstream release:
calls melting from the PATH with its base name (Closes: #549881).
* debian/melting/install:
multi.pl and profil.pl available in /usr/share/melting.
* debian/copyright refreshed to latest experimentations on the format.
* Target generating tkmelting manpage removed from debian/rules.
* Added various informations about upstream in debian/upstream-metadata.yaml.
* Document how to test melting and tkmelting in debian/README.Debian.
2009-09-30 - Andreas Tille <tille@debian.org>
melting (4.3b-1) unstable; urgency=low
Tkmelting did not work in my tests.
* New upstream release, with new options for Tris, potassium and magnesium
concentrations, as well as support for inosine bases.
[ Charles Plessy ]
* debian/control:
- Moved bibliographic reference from the long description to a BibTeX file
(debian/reference, installed in /usr/share/doc/melting/reference).
- Incremented Standards-Version to reflect conformance with Policy 3.8.1
(no changes needed).
- Improved the description of melting-gui (Closes: #528999).
- Dropped versionned build-dependency on quilt (satisfied even in
oldstable).
- Build-Depend on dephelper 7 (debian/compat set to 7).
* debian/rules
- NNDIR=/usr/share/melting/NNFILES passed as a make argument instead of
through a patch (debian/patches/makefile.patch deleted).
- clean target rewritten so that debian/patches/makefile-clean.patch could
be deleted.
- Use ‘dh’ in binary-arch and binary-indep targets.
* Deleted debian/patches/melting.c_silent.patch and
debian/patches/melting.1_escape.patch cosmetic deviations from Upstream.
* debian/copyright updated and converted to latest version of the
machine-readable format.
* debian/tkmelting.1* and debian/melting-gui.desktop were adopted upstream and
deleted from the debian directory.
[ David Paleino ]
* Removed myself from Uploaders
[ Andreas Tille ]
* debian/control:
- Standards-Version: 3.8.3 (Added README.Source)
- s/Debian-Med/Debian Med/
* debian/patches/20_fix_manpage.patch: Fix typo in manpage

See Also

Package Description
members_20080128-5+nmu1+b1_i386.deb Shows the members of a group; by default, all members
memcached_1.5.6-1.1_i386.deb high-performance memory object caching system
memdump_1.01-8_i386.deb utility to dump memory contents to standard output
memlockd_1.2_i386.deb daemon to lock files into RAM
memstat_1.1_i386.deb Identify what's using up virtual memory
memtest86+_5.01-3_i386.deb thorough real-mode memory tester
memtest86_4.3.7-3_i386.deb thorough real-mode memory tester
memtester_4.3.0-4+b1_i386.deb Utility for testing the memory subsystem
memtool_2018.03.0-1_i386.deb Development tool to modify memory mapped registers
mencal_3.0-4_all.deb menstruation calendar
mencoder_1.3.0-8+b4_i386.deb MPlayer's Movie Encoder
mender-artifact_3.0.0+really2.4.0-1_i386.deb utility to generate .mender artifacts
mender-cli_1.1.0-1+b10_i386.deb general-purpose CLI for the Mender backend
mender-client_1.7.0-4+b12_i386.deb Mender over-the-air software updater client
menhir-doc_20181113-1_all.deb Documentation of the Menhir parser generator for OCaml
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