mauve-aligner_2.4.0+4736-1_i386.deb


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Description

mauve-aligner - multiple genome alignment

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename mauve-aligner_2.4.0+4736-1_i386.deb
Package name mauve-aligner
Package version 2.4.0+4736
Package release 1
Package architecture i386
Package type deb
Category science
Homepage http://darlinglab.org/mauve/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 479.88 KB
Installed size 546.00 KB
Mauve is a system for efficiently constructing multiple genome alignments
in the presence of large-scale evolutionary events such as rearrangement
and inversion. Multiple genome alignment provides a basis for research
into comparative genomics and the study of evolutionary dynamics.  Aligning
whole genomes is a fundamentally different problem than aligning short
sequences.
Mauve has been developed with the idea that a multiple genome aligner
should require only modest computational resources. It employs algorithmic
techniques that scale well in the amount of sequence being aligned. For
example, a pair of Y. pestis genomes can be aligned in under a minute,
while a group of 9 divergent Enterobacterial genomes can be aligned in
a few hours.
Mauve computes and interactively visualizes genome sequence comparisons.
Using FastA or GenBank sequence data, Mauve constructs multiple genome
alignments that identify large-scale rearrangement, gene gain, gene loss,
indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.

Alternatives

Package Version Architecture Repository
mauve-aligner_2.4.0+4736-1_amd64.deb 2.4.0+4736 amd64 Debian Main
mauve-aligner - - -

Requires

Name Value
icedtea-netx-common -
java-wrappers -
libbiojava-java -
libbiojava1.7-java -
libcommons-cli-java -
libdbus-java -
libunixsocket-java -
libzeus-jscl-java -
progressivemauve -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package mauve-aligner_2.4.0+4736-1_i386.deb
Source Package mauve-aligner

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mauve-aligner deb package:
    # sudo apt-get install mauve-aligner

Files

Path
/usr/bin/mauve
/usr/bin/mauve-contig-mover
/usr/share/applications/mauve-aligner.desktop
/usr/share/doc/mauve-aligner/changelog.Debian.gz
/usr/share/doc/mauve-aligner/copyright
/usr/share/icons/hicolor/32x32/apps/mauve-aligner.png
/usr/share/java/Mauve.jar

Changelog

2018-07-04 - Andreas Tille <tille@debian.org>
mauve-aligner (2.4.0+4736-1) unstable; urgency=medium
* New upstream SVN checkout
* Fake watch file
* d/rules: do not uselessly parse d/changelog
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2015-11-21 - Afif Elghraoui <afif@ghraoui.name>
mauve-aligner (2.4.0+4734-3) unstable; urgency=high
* Add explicit dependency on libbiojava-java to enable
functionality of the GUI
* Create a desktop menu to launch the GUI
2015-08-19 - Andreas Tille <tille@debian.org>
mauve-aligner (2.4.0+4734-2) unstable; urgency=medium
* Add missing dependency: java-wrappers
Closes: #796029
2015-07-16 - Andreas Tille <tille@debian.org>
mauve-aligner (2.4.0+4734-1) unstable; urgency=medium
* Initial release (Closes: #787209)

See Also

Package Description
mauve_20161030-1_all.deb free test suite for the Java Class libraries
maven-ant-helper_8.5_all.deb helper scripts for building Maven components with ant
maven-cache-cleanup_1.0.4-1_all.deb Utility to purge timestamped snapshots from Maven repositories
maven-debian-helper_2.3.2_all.deb Helper tools for building Debian packages with Maven
maven-repo-helper_1.9.3_all.deb Helper tools for including Maven metadata in Debian packages
maven_3.6.0-1_all.deb Java software project management and comprehension tool
mawk_1.3.3-17+b3_i386.deb a pattern scanning and text processing language
maxima-doc_5.42.1-1_all.deb Computer algebra system -- documentation
maxima-emacs_5.42.1-1_all.deb Computer algebra system -- emacs interface
maxima-sage-doc_5.41.0+ds-4_all.deb Computer algebra system -- documentation
maxima-sage-share_5.41.0+ds-4_all.deb Computer algebra system -- extra code
maxima-sage_5.41.0+ds-4_i386.deb Computer algebra system -- base system
maxima-share_5.42.1-1_all.deb Computer algebra system -- extra code
maxima-src_5.42.1-1_all.deb Computer algebra system -- source code
maxima-test_5.42.1-1_all.deb Computer algebra system -- test suite
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