maffilter_1.3.1+dfsg-1+b1_i386.deb


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Description

maffilter - process genome alignment in the Multiple Alignment Format

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package name maffilter
Package version 1.3.1+dfsg
Package release 1+b1
Package architecture i386
Package type deb
Installed size 806 B
Download size 213.40 KB
Official Mirror ftp.br.debian.org
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.

Alternatives

Package Version Architecture Repository
maffilter_1.3.1+dfsg-1+b1_amd64.deb 1.3.1+dfsg amd64 Debian Main
maffilter - - -

Requires

Name Value
libboost iostreams1.67.0
libboost-regex1.67.0 >= 1.67.0-10
libbpp phyl12
libbpp core4
libbpp seq12
libbpp-phyl-omics3 >= 2.4.1
libbpp-seq omics3
libbz2 1.0
libc6 >= 2.1.3
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package maffilter_1.3.1+dfsg-1+b1_i386.deb
Source Package maffilter

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install maffilter deb package:
    # sudo apt-get install maffilter

Files

Path
/usr/bin/maffilter
/usr/share/doc/maffilter/AUTHORS
/usr/share/doc/maffilter/changelog.Debian.gz
/usr/share/doc/maffilter/changelog.Debian.i386.gz
/usr/share/doc/maffilter/changelog.gz
/usr/share/doc/maffilter/copyright
/usr/share/info/maffilter.info.gz
/usr/share/man/man1/maffilter.1.gz

Changelog

2018-08-22 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
maffilter (1.3.1+dfsg-1) unstable; urgency=medium
[ Julien Dutheil ]
* New upstream version.
[ Andreas Tille ]
* Standards-Version: 4.2.0
2018-04-30 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
maffilter (1.3.0+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* Added ref to OMICtools registry
(bio.tools and RRID entries not available)
[ Julien Y. Dutheil ]
* New upstream version (Closes: #896486).
* Standards-Version: 4.1.4
* debhelper 11
* Updated Vcs-Browser and Vcs-Git
* Updated Homepage
2017-06-22 - Andreas Tille <tille@debian.org>
maffilter (1.2.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Fix watch file
* debhelper 10
* adjust versioned Build-Depends
* hardening=+all
2016-05-22 - Andreas Tille <tille@debian.org>
maffilter (1.1.0-1+dfsg-2) unstable; urgency=medium
* Fix permissions
* Properly install executable and info file
2016-04-27 - Andreas Tille <tille@debian.org>
maffilter (1.1.0-1+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #822776)

See Also

Package Description
mafft_7.407-2_i386.deb Multiple alignment program for amino acid or nucleotide sequences
magic-wormhole-transit-relay_0.1.2-1_all.deb Transit Relay server for Magic-Wormhole
magic-wormhole_0.11.2-1_all.deb Securely and simply transfer data between computers
magic_8.1.223+ds.1-1_i386.deb VLSI layout tool
magicfilter_1.2-65_i386.deb automatic printer filter
magicmaze_1.4.3.6+dfsg-3_all.deb rescue the maiden while avoiding the monsters
magicor-data_1.1-4_all.deb data files for the magicor puzzle game
magicor_1.1-4_all.deb puzzle game in the spirit of solomon's key
magicrescue_1.1.10-2_i386.deb recover files by looking for magic bytes
magics++_3.3.1-1_i386.deb Executables for the magics++ library
magit_2.90.1-2_all.deb transitional dummy package for elpa-magit
magnum-api_7.1.0-1_all.deb OpenStack containers as a service
magnum-common_7.1.0-1_all.deb OpenStack containers as a service - API server
magnum-conductor_7.1.0-1_all.deb OpenStack containers as a service - conductor
mah-jong_1.11-2+b2_i386.deb Original Mah-Jong game
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