loki_2.4.7.4-8_i386.deb


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Description

loki - MCMC linkage analysis on general pedigrees

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename loki_2.4.7.4-8_i386.deb
Package name loki
Package version 2.4.7.4
Package release 8
Package architecture i386
Package type deb
Category field::biology implemented-in::c interface::commandline role::program science scope::utility use::TODO use::analysing works-with-format::TODO works-with::TODO
Homepage -
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 346.86 KB
Installed size 930.00 KB
Performs Markov chain Monte Carlo multipoint linkage analysis on large,
complex pedigrees.  The current package supports analyses on quantitative
traits only, although this restriction will be lifted in later versions.
Joint estimation of QTL number, position and effects uses Reversible Jump
MCMC. It is also possible to perform affected only IBD sharing analyses.

Alternatives

Package Version Architecture Repository
loki_2.4.7.4-8_amd64.deb 2.4.7.4 amd64 Debian Main
loki - - -

Requires

Name Value
libc6 >= 2.27

Download

Type URL
Mirror ftp.br.debian.org
Binary Package loki_2.4.7.4-8_i386.deb
Source Package loki

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install loki deb package:
    # sudo apt-get install loki

Files

Path
/usr/bin/hist
/usr/bin/loki
/usr/bin/loki_count
/usr/bin/loki_dist
/usr/bin/loki_ext
/usr/bin/loki_freq
/usr/bin/loki_sort_error
/usr/bin/prep
/usr/bin/qavg
/usr/share/doc/loki/README
/usr/share/doc/loki/README.Debian
/usr/share/doc/loki/README.known_systems
/usr/share/doc/loki/README.multiple_records
/usr/share/doc/loki/README.parallel_runs
/usr/share/doc/loki/changelog.Debian.gz
/usr/share/doc/loki/changelog.gz
/usr/share/doc/loki/copyright
/usr/share/man/man1/check_het.1.gz
/usr/share/man/man1/hist.1.gz
/usr/share/man/man1/loki.1.gz
/usr/share/man/man1/loki_count.1.gz
/usr/share/man/man1/loki_dist.1.gz
/usr/share/man/man1/loki_ext.1.gz
/usr/share/man/man1/loki_freq.1.gz
/usr/share/man/man1/loki_sort_error.1.gz
/usr/share/man/man1/prep.1.gz
/usr/share/man/man1/qavg.1.gz

Changelog

2018-10-12 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-8) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* hardening=+all
* Fix spelling
2017-10-05 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-7) unstable; urgency=medium
* Moved packaging from SVN to Git
* Standards-Version: 4.1.1
* debhelper 10
* Remove Carleos Artime from Uploaders
* Add fake watch file
* Try better hardening (with no real effect)
* Do not parse d/changelog in d/rules
2015-11-24 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-6) unstable; urgency=medium
* cme fix dpkg-control
* apply install target only for architecture dependent target
Closes: #806070
* Add DEP3 header
* DEP5 fix
2013-10-28 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-5) unstable; urgency=low
* debian/upstream: added citation information
* debian/control:
- Standards-Version: 3.9.4 (no changes needed)
- cme fix dpkg-control
- Fixed Vcs fields
- Depends: ${misc:Depends}
- Canonical Vcs URLs
- Removed Homepage field since homepage vanished from the net
* debian/source/format: 3.0 (quilt)
* debian/copyright: DEP5
* debian/rules: switch from cdbs to dh
* debhelper 9 to enable hardening flags
* debian/patches/hardening.patch
2008-03-25 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-4) unstable; urgency=low
* Fixed lokisrc/param_lex.l and regenerated C file to solve problem
with redefined __unused on 64 bit systems (Thanks to brian m. carlson
<sandals@crustytoothpaste.ath.cx>)
Closes: #409370
2008-03-23 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-3) unstable; urgency=low
* Fixed install target to install to debian/tmp correctly
Closes: #472320
2008-03-20 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-2) unstable; urgency=low
* Debhelper 5
* Standards-Version: 3.7.3 (no changes necessary)
* Switch to cdbs
* Use quilt and patches
* Removed [Biology] from short description
* Added hint to long description that the project is dead
and homepage vanished
* Group maintenance according to Debian-Med policy
* Added Vcs-Fields
* Added Homepage tag (with download page of latest upstream source,
upstream seems to be dead since 1995)        
* Removed watch file because project is dead upstream so watch
makes no sense
* Use a single manpage and symlinks instead of several copies of the
very same manpage file
* Remove menu entry that just calls man loki
* Fixed Section in doc-base files
* Moced doc package to section doc (as suggested by lintian)
2004-09-24 - Carleos Artime <carleos@uniovi.es>
loki (2.4.7.4-1) unstable; urgency=low
* New upstream release
closes: #254166
* Added a hint about loki-doc package in README.Debian.
* Standards-Version: 3.6.1
2003-04-25 - Carleos Artime <carleos@pinon.ccu.uniovi.es>
loki (2.4.6-1) unstable; urgency=low
* First official release
closes: #155071
* New upstream release.
* Changed section in debian/control from "misc" to "science".
* Added homepage to package description in debian/control.
* Split up into two packages (loki, loki-doc).
* Changes by Andreas Tille <tille@debian.org>
- Added "Suggests: loki-doc" to loki
- Changed "Depends" to "Suggests: loki" in loki-doc to enable
reading online documentation without installing the binary package
- used debian/loki-doc.docs and dh_installdocs to install documentation
- moved debian/lokifaq.doc-base to debian/loki-doc.doc-base.lokifaq and
debian/lokimanual.doc-base debian/loki-doc.doc-base.lokimanual
- Added debian/loci-doc.README.Debian to give a hint at the LaTeX
source of the documentation.

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