logol_1.7.9-1_all.deb


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Description

logol - Pattern matching tool using Logol language

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename logol_1.7.9-1_all.deb
Package name logol
Package version 1.7.9
Package release 1
Package architecture all
Package type deb
Category science
Homepage http://logol.genouest.org
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 1.55 MB
Installed size 1.92 MB
Logol is a pattern matching tool using the Logol language.
It searches with a specific grammar for a pattern in small
or large sequences (DNA, RNA, protein). It provides complete
result matching with the original grammar in the results.

Alternatives

Package Version Architecture Repository
logol_1.7.9-1_all.deb 1.7.9 all Debian Main
logol - - -

Requires

Name Value
antlr3 -
cassiopee -
default-jre -
gawk -
java7-runtime -
libbiojava-java -
libcommons-cli-java -
libcommons-collections3-java -
libcommons-configuration-java -
libcommons-lang-java -
libcommons-logging-java -
liblog4j1.2-java -
libmail-java -
libxalan2-java -
libxerces2-java -
logol-bin -
ruby -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package logol_1.7.9-1_all.deb
Source Package logol

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install logol deb package:
    # sudo apt-get install logol

Files

Path
/etc/logol/logol.properties
/usr/bin/LogolExec
/usr/bin/LogolMultiExec
/usr/share/doc-base/logol
/usr/share/doc/logol/LogolGrammar.txt
/usr/share/doc/logol/README.Debian
/usr/share/doc/logol/README.md
/usr/share/doc/logol/SWI-README
/usr/share/doc/logol/changelog.Debian.gz
/usr/share/doc/logol/changelog.gz
/usr/share/doc/logol/copyright
/usr/share/doc/logol/logol-usage.pdf.gz
/usr/share/doc/logol/logolParser.pdf.gz
/usr/share/doc/logol/tutorial.pdf.gz
/usr/share/doc/logol/examples/1799.fasta
/usr/share/doc/logol/examples/1799.logol
/usr/share/doc/logol/examples/1800.fasta
/usr/share/doc/logol/examples/1800.logol
/usr/share/doc/logol/examples/1806.logol
/usr/share/doc/logol/examples/2235.fasta
/usr/share/doc/logol/examples/2235.logol
/usr/share/doc/logol/examples/2242.fasta
/usr/share/doc/logol/examples/2242.logol
/usr/share/doc/logol/examples/2243.fasta
/usr/share/doc/logol/examples/2243.logol
/usr/share/doc/logol/examples/2244.fasta
/usr/share/doc/logol/examples/2244.logol
/usr/share/doc/logol/examples/all.lgd
/usr/share/doc/logol/examples/all.logol
/usr/share/doc/logol/examples/alphabet.logol
/usr/share/doc/logol/examples/ambiguous.logol
/usr/share/doc/logol/examples/anyspacer.lgd
/usr/share/doc/logol/examples/anyspacer.logol
/usr/share/doc/logol/examples/begin.lgd
/usr/share/doc/logol/examples/begin.logol
/usr/share/doc/logol/examples/begin_postpone.logol
/usr/share/doc/logol/examples/call_model.logol
/usr/share/doc/logol/examples/call_model2.logol
/usr/share/doc/logol/examples/call_model3.logol
/usr/share/doc/logol/examples/call_model4.logol
/usr/share/doc/logol/examples/comment.logol
/usr/share/doc/logol/examples/comment2.logol
/usr/share/doc/logol/examples/complement.logol
/usr/share/doc/logol/examples/complex.logol
/usr/share/doc/logol/examples/cost_postpone.logol
/usr/share/doc/logol/examples/end.logol
/usr/share/doc/logol/examples/end_of_stream1.logol
/usr/share/doc/logol/examples/end_of_stream2.logol
/usr/share/doc/logol/examples/external.logol
/usr/share/doc/logol/examples/external2.logol
/usr/share/doc/logol/examples/fix2244.logol
/usr/share/doc/logol/examples/halt.logol
/usr/share/doc/logol/examples/indel.fasta
/usr/share/doc/logol/examples/indel.logol
/usr/share/doc/logol/examples/logol.properties
/usr/share/doc/logol/examples/metacontrol.logol
/usr/share/doc/logol/examples/morphism.lgd
/usr/share/doc/logol/examples/morphism.logol
/usr/share/doc/logol/examples/morphism_var.logol
/usr/share/doc/logol/examples/multiple_model.logol
/usr/share/doc/logol/examples/mycost.logol
/usr/share/doc/logol/examples/negcontent.lgd
/usr/share/doc/logol/examples/negcontent.logol
/usr/share/doc/logol/examples/negcontent2.logol
/usr/share/doc/logol/examples/negcontent3.logol
/usr/share/doc/logol/examples/notrepeat.logol
/usr/share/doc/logol/examples/notview.logol
/usr/share/doc/logol/examples/optimal.lgd
/usr/share/doc/logol/examples/optimal.logol
/usr/share/doc/logol/examples/or_condition.logol
/usr/share/doc/logol/examples/or_condition2.logol
/usr/share/doc/logol/examples/overlap.logol
/usr/share/doc/logol/examples/parent_exact.logol
/usr/share/doc/logol/examples/parent_witherror.logol
/usr/share/doc/logol/examples/parent_witherror2.logol
/usr/share/doc/logol/examples/partialcomplement.logol
/usr/share/doc/logol/examples/postponemodel.logol
/usr/share/doc/logol/examples/protein.fasta
/usr/share/doc/logol/examples/protein.logol
/usr/share/doc/logol/examples/repeat.logol
/usr/share/doc/logol/examples/repeat0.logol
/usr/share/doc/logol/examples/repeat2.logol
/usr/share/doc/logol/examples/repeat_any.logol
/usr/share/doc/logol/examples/repeat_anyspacer.logol
/usr/share/doc/logol/examples/repeat_interspacer.logol
/usr/share/doc/logol/examples/repeat_overlap.logol
/usr/share/doc/logol/examples/repeat_startspacer.logol
/usr/share/doc/logol/examples/reverse.logol
/usr/share/doc/logol/examples/ruby-cassiopee.properties
/usr/share/doc/logol/examples/test.fasta
/usr/share/doc/logol/examples/variable.lgd
/usr/share/doc/logol/examples/variable.logol
/usr/share/doc/logol/examples/variable_postcontent.logol
/usr/share/doc/logol/examples/variable_postcontent_witherror.logol
/usr/share/doc/logol/examples/variable_unknown.logol
/usr/share/doc/logol/examples/variablewithdistance.logol
/usr/share/doc/logol/examples/variablewithdistance2.logol
/usr/share/doc/logol/examples/variablewitherror.logol
/usr/share/doc/logol/examples/variablewitherroranddistance.logol
/usr/share/doc/logol/examples/view_begin.logol
/usr/share/doc/logol/examples/vmatch.fasta
/usr/share/doc/logol/examples/vmatch.logol
/usr/share/doc/logol/examples/vmatch.properties
/usr/share/doc/logol/examples/vmatch2.logol
/usr/share/doc/logol/examples/vmatch3.logol
/usr/share/lintian/overrides/logol
/usr/share/logol/LogolExec.sh
/usr/share/logol/LogolMultiExec.sh
/usr/share/logol/Model2Grammar.sh
/usr/share/logol/convert2fasta.sh
/usr/share/logol/convert2gff.sh
/usr/share/logol/log4j.properties
/usr/share/logol/lib/LogolExec.jar
/usr/share/logol/lib/antlr.jar
/usr/share/logol/lib/biojava.jar
/usr/share/logol/lib/commons-cli.jar
/usr/share/logol/lib/commons-collections.jar
/usr/share/logol/lib/commons-configuration.jar
/usr/share/logol/lib/commons-lang.jar
/usr/share/logol/lib/commons-logging.jar
/usr/share/logol/lib/log4j-1.2.jar
/usr/share/logol/lib/mail.jar
/usr/share/logol/lib/serializer.jar
/usr/share/logol/lib/xalan.jar
/usr/share/logol/lib/xercesImpl.jar
/usr/share/logol/lib/xml-apis.jar
/usr/share/logol/prolog/SWI-README
/usr/share/logol/prolog/logol.merge.xsl
/usr/share/logol/prolog/logol.order.xsl
/usr/share/logol/prolog/logol.pl
/usr/share/logol/prolog/logol.properties
/usr/share/logol/prolog/mail.tpl
/usr/share/logol/prolog/mapfile.dna
/usr/share/logol/prolog/match.dtd
/usr/share/logol/prolog/optimal.pro
/usr/share/logol/prolog/sicstus.pl
/usr/share/logol/prolog/swi-logol.pl
/usr/share/logol/prolog/unitTest/plunittest.pro
/usr/share/logol/prolog/unitTest/sampleUnit.pro
/usr/share/logol/prolog/unitTest/swi-unit.pl
/usr/share/logol/tools/README.txt
/usr/share/logol/tools/amb.map
/usr/share/logol/tools/cassiopeeSearch.rb
/usr/share/logol/tools/generate-doc.sh
/usr/share/logol/tools/logol.aux
/usr/share/logol/tools/logol.idx
/usr/share/logol/tools/logol.log
/usr/share/logol/tools/logol.out
/usr/share/logol/tools/logolIndex.rb
/usr/share/logol/tools/logolSearch.rb
/usr/share/logol/tools/logolSearch.sh
/usr/share/logol/tools/mycostfunction
/usr/share/logol/tools/pldoc.sty.upstream
/usr/share/logol/tools/suffixSearch.rb
/usr/share/logol/tools/swidoc.pl
/usr/share/man/man1/LogolExec.1.gz
/usr/share/man/man1/LogolMultiExec.1.gz

Changelog

2018-12-20 - Andreas Tille <tille@debian.org>
logol (1.7.9-1) unstable; urgency=medium
* Team upload.
* New upstream version
[ Olivier Sallou ]
* Fix FTBS with swi-prolog 7.7.25 (Closes: #916953).
2018-10-29 - Andreas Tille <tille@debian.org>
logol (1.7.8-3) unstable; urgency=medium
* Team upload.
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/rules
2018-06-01 - Olivier Sallou <osallou@debian.org>
logol (1.7.8-2) unstable; urgency=medium
* Remove ncurses dependency (Closes: #804579)
2018-04-04 - Olivier Sallou <osallou@debian.org>
logol (1.7.8-1) unstable; urgency=medium
* New upstream release (bug fixes)
2017-12-07 - Olivier Sallou <osallou@debian.org>
logol (1.7.6-1) unstable; urgency=medium
* New upstream release
2017-10-07 - Andreas Tille <tille@debian.org>
logol (1.7.5-2) unstable; urgency=medium
* Team upload.
* Moved packaging from SVN to Git
* cme fix dpkg-control
* Standards-Version: 4.1.1
* remove drmaa sym link as patches remove drmaa support
while drmaa is back in Debian, new release is not compatible
with current upstream code, Closes: #877461
* debhelper 10
2016-11-16 - Olivier Sallou <osallou@debian.org>
logol (1.7.5-1) unstable; urgency=medium
* New upstream release
2016-04-12 - Olivier Sallou <osallou@debian.org>
logol (1.7.4-1) unstable; urgency=medium
* New upstream release
2015-07-31 - Emmanuel Bourg <ebourg@apache.org>
logol (1.7.2-3) unstable; urgency=medium
* Team upload.
* Depend on libmail-java instead of libgnumail-java
[ Olivier Sallou ]
- Fix antlr 3.5 parser generation issue (relates to #820286)
Closes: #811185.
2015-06-29 - Olivier Sallou <osallou@debian.org>
logol (1.7.2-2) unstable; urgency=medium
* d/patches/fix_swipl72: Fix swipl v7.x compatibility (Closes: #790136).

See Also

Package Description
logrotate_3.14.0-4_i386.deb Log rotation utility
logstalgia_1.1.0-2+b1_i386.deb web server access log visualizer
logswan_2.0.3-1_i386.deb fast Web log analyzer using probabilistic data structures
logtail_1.3.20_all.deb Print log file lines that have not been read
logtool_1.2.8-10_i386.deb Syslog-style logfile parser with lots of output options
logtools_0.13e_i386.deb Russell's misc tools for managing log files
logtop_0.4.3-1+b3_i386.deb real time log line rate analyzer
logwatch_7.5.0-1_all.deb log analyser with nice output written in Perl
lojban-common_1.5+dfsg.1-3_all.deb commonly-used wordlists for the Lojban language
lokalize_18.08.1-1+b1_i386.deb computer-aided translation system
loki-doc_2.4.7.4-8_all.deb MCMC linkage analysis on general pedigrees (PS manual)
loki_2.4.7.4-8_i386.deb MCMC linkage analysis on general pedigrees
lolcat_42.0.99-1_all.deb colorful `cat`
lomoco_1.0.0-3_i386.deb Logitech Mouse Control for USB mice
londonlaw_0.2.1-20_all.deb Scotland Yard board game with network support
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