libncbi-vdb2_2.9.3+dfsg-2_i386.deb


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Description

libncbi-vdb2 - libraries for using data in the INSDC Sequence Read Archives

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libncbi-vdb2_2.9.3+dfsg-2_i386.deb
Package name libncbi-vdb2
Package version 2.9.3+dfsg
Package release 2
Package architecture i386
Package type deb
Category libs role::shared-lib
Homepage https://github.com/ncbi/ncbi-vdb
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 1.06 MB
Installed size 4.48 MB
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.

Alternatives

Package Version Architecture Repository
libncbi-vdb2_2.9.3+dfsg-2_amd64.deb 2.9.3+dfsg amd64 Debian Main
libncbi-vdb2 - - -

Requires

Name Value
libbz2-1.0 -
libc6 >= 2.28
libmbedcrypto3 >= 2.13
libmbedtls12 >= 2.13
libmbedx509-0 >= 2.0
libxml2 >= 2.7.4
zlib1g >= 1:1.2.2

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libncbi-vdb2_2.9.3+dfsg-2_i386.deb
Source Package ncbi-vdb

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libncbi-vdb2 deb package:
    # sudo apt-get install libncbi-vdb2

Files

Path
/usr/lib/i386-linux-gnu/libncbi-vdb.so.2
/usr/lib/i386-linux-gnu/libncbi-vdb.so.2.9.3
/usr/lib/ncbi-vdb/align/align.vschema
/usr/lib/ncbi-vdb/align/mate-cache.vschema
/usr/lib/ncbi-vdb/align/pileup-stats.vschema
/usr/lib/ncbi-vdb/align/qstat.vschema
/usr/lib/ncbi-vdb/align/refseq.vschema
/usr/lib/ncbi-vdb/align/seq.vschema
/usr/lib/ncbi-vdb/csra2/csra2.vschema
/usr/lib/ncbi-vdb/csra2/read.vschema
/usr/lib/ncbi-vdb/csra2/reference.vschema
/usr/lib/ncbi-vdb/csra2/stats.vschema
/usr/lib/ncbi-vdb/insdc/insdc.vschema
/usr/lib/ncbi-vdb/insdc/seq.vschema
/usr/lib/ncbi-vdb/insdc/sra.vschema
/usr/lib/ncbi-vdb/kfg/certs.kfg
/usr/lib/ncbi-vdb/kfg/default.kfg
/usr/lib/ncbi-vdb/ncbi/clip.vschema
/usr/lib/ncbi-vdb/ncbi/ncbi.vschema
/usr/lib/ncbi-vdb/ncbi/pnbrdb.vschema
/usr/lib/ncbi-vdb/ncbi/seq-graph.vschema
/usr/lib/ncbi-vdb/ncbi/seq.vschema
/usr/lib/ncbi-vdb/ncbi/spotname.vschema
/usr/lib/ncbi-vdb/ncbi/sra.vschema
/usr/lib/ncbi-vdb/ncbi/stats.vschema
/usr/lib/ncbi-vdb/ncbi/varloc.vschema
/usr/lib/ncbi-vdb/ncbi/wgs-contig.vschema
/usr/lib/ncbi-vdb/sra/454.vschema
/usr/lib/ncbi-vdb/sra/abi.vschema
/usr/lib/ncbi-vdb/sra/generic-fastq.vschema
/usr/lib/ncbi-vdb/sra/helicos.vschema
/usr/lib/ncbi-vdb/sra/illumina.vschema
/usr/lib/ncbi-vdb/sra/ion-torrent.vschema
/usr/lib/ncbi-vdb/sra/nanopore.vschema
/usr/lib/ncbi-vdb/sra/pacbio.vschema
/usr/lib/ncbi-vdb/sra/pevents.vschema
/usr/lib/ncbi-vdb/vdb/built-in.vschema
/usr/lib/ncbi-vdb/vdb/vdb.vschema
/usr/share/doc/libncbi-vdb2/README.md
/usr/share/doc/libncbi-vdb2/changelog.Debian.gz
/usr/share/doc/libncbi-vdb2/changelog.gz
/usr/share/doc/libncbi-vdb2/copyright

Changelog

2019-01-14 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.3+dfsg-2) unstable; urgency=medium
* Replace remainin occurrence of vdb_mbedtls_ssl_conf_authmode by
mbedtls_ssl_conf_authmode
Closes: #919306
2019-01-11 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.3+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
2018-09-04 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.2-1+dfsg-1) unstable; urgency=medium
* New upstream version
[ Steve Langasek ]
* add missing implementation of uint64_msbit for i386
Closes: #907358
[ Andreas Tille ]
* d/rules:
- DEB_LDFLAGS_MAINT_APPEND := -Wl,--as-needed
- Considered using
DEB_LDFLAGS_MAINT_APPEND := -Wl,-z,defs
which should prevent successful build of a broken library (thanks
for the hint to Steve Langasek) Unfortunately this uncovers several
other build failures - volunteers to provide the correct linker
flags are welcome
- dh_auto_build --no-parallel
* Standards-Version: 4.2.1
2018-06-28 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.1-1+dfsg-1) unstable; urgency=medium
* New upstream version
* Fixes accidental ABI break in 2.9.1
Closes: #902566
2018-06-27 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2018-04-01 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.0-1+dfsg-2) unstable; urgency=medium
* Drop some unneeded d-shlibs overrides available in version 0.82
* New library package libvdb-sqlite2 / libvdb-sqlite-dev featuring
the sqlite interface
2018-03-19 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.9.0-1+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
* d/rules: s/DEB_BUILD_OPTIONS/DH_BUILD_MAINT_OPTIONS/
2017-10-19 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.8.2-2+dfsg-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* Standards-Version: 4.1.1
* More adaptations to Debian packaged libmbedx
* d/rules: Do not parse changelog
* Try better hardening
2017-04-01 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.8.1+dfsg-2) unstable; urgency=medium
* Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE
(thanks for the patch to Graham Inggs <ginggs@debian.org>)
Closes: #859260
2017-01-11 - Andreas Tille <tille@debian.org>
ncbi-vdb (2.8.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Install libs/kfg/*.kfg into /usr/lib/ncbi-vdb/kfg/

See Also

Package Description
libncbi-wvdb-dev_2.9.3+dfsg-2_i386.deb virtual layer update modul of ncbi-vdb library (devel)
libncbi-wvdb2_2.9.3+dfsg-2_i386.deb virtual layer update modul of ncbi-vdb library
libncbi6-dev_6.1.20170106-6_i386.deb NCBI libraries for biology applications (development files)
libncbi6_6.1.20170106-6_i386.deb NCBI libraries for biology applications
libncl-dev_2.1.21+git20180827.c71b264-2_i386.deb NEXUS Class Library (static lib and header files)
libncl2_2.1.21+git20180827.c71b264-2_i386.deb NEXUS Class Library
libncurses-dev_6.1+20181013-2_i386.deb developer's libraries for ncurses
libncurses5-dev_6.1+20181013-2_i386.deb transitional package for libncurses-dev
libncurses5_6.1+20181013-2_i386.deb shared libraries for terminal handling (legacy version)
libncurses6_6.1+20181013-2_i386.deb shared libraries for terminal handling
libncursesada-doc_6.1.20180127-3_all.deb Ada binding to the ncurses text interface library: documentation
libncursesada6.2.20180127-dev_6.1.20180127-3_i386.deb Ada binding to the ncurses text interface library: development
libncursesada6.2.20180127_6.1.20180127-3_i386.deb Ada binding to the ncurses text interface library: shared library
libncursesw5-dev_6.1+20181013-2_i386.deb transitional package for libncurses-dev
libncursesw5_6.1+20181013-2_i386.deb shared libraries for terminal handling (wide character legacy version)
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