libmems-dev_1.6.0+4725-8+b1_i386.deb


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Description

libmems-dev - development library to support DNA string matching and comparative genomics

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libmems-dev_1.6.0+4725-8+b1_i386.deb
Package name libmems-dev
Package version 1.6.0+4725
Package release 8+b1
Package architecture i386
Package type deb
Category devel::library libdevel role::devel-lib
Homepage http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 906.26 KB
Installed size 5.55 MB
libMems is a freely available software development library to support DNA
string matching and comparative genomics. Among other things, libMems
implements an algorithm to perform approximate multi-MUM and multi-MEM
identification. The algorithm uses spaced seed patterns in conjunction
with a seed-and-extend style hashing method to identify matches. The method
is efficient, requiring a maximum of only 16 bytes per base of the largest
input sequence, and this data can be stored externally (i.e. on disk) to
further reduce memory requirements.
This is the development package containing the statically linked
library and the header files.

Alternatives

Package Version Architecture Repository
libmems-dev_1.6.0+4725-8+b1_amd64.deb 1.6.0+4725 amd64 Debian Main
libmems-dev - - -

Requires

Name Value
libboost-filesystem1.67-dev -
libboost-iostreams1.67-dev -
libboost-system1.67-dev -
libgenome-dev -
libmems1 = 1.6.0+4725-8+b1
libmuscle-dev -

Provides

Name Value
libmems-1.6-dev -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libmems-dev_1.6.0+4725-8+b1_i386.deb
Source Package libmems

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libmems-dev deb package:
    # sudo apt-get install libmems-dev

Files

Path
/usr/include/libMems/AbstractGappedAlignment.h
/usr/include/libMems/AbstractMatch.h
/usr/include/libMems/Aligner.h
/usr/include/libMems/Backbone.h
/usr/include/libMems/CompactGappedAlignment.h
/usr/include/libMems/DNAFileSML.h
/usr/include/libMems/DNAMemorySML.h
/usr/include/libMems/DenseAbstractMatch.h
/usr/include/libMems/DistanceMatrix.h
/usr/include/libMems/FileSML.h
/usr/include/libMems/Files.h
/usr/include/libMems/GappedAligner.h
/usr/include/libMems/GappedAlignment.h
/usr/include/libMems/GreedyBreakpointElimination.h
/usr/include/libMems/HybridAbstractMatch.h
/usr/include/libMems/Interval.h
/usr/include/libMems/IntervalList.h
/usr/include/libMems/Islands.h
/usr/include/libMems/LCB.h
/usr/include/libMems/MaskedMemHash.h
/usr/include/libMems/Match.h
/usr/include/libMems/MatchFinder.h
/usr/include/libMems/MatchHashEntry.h
/usr/include/libMems/MatchList.h
/usr/include/libMems/MatchProjectionAdapter.h
/usr/include/libMems/Matrix.h
/usr/include/libMems/MemHash.h
/usr/include/libMems/Memory.h
/usr/include/libMems/MemorySML.h
/usr/include/libMems/MuscleInterface.h
/usr/include/libMems/NumericMatrix.h
/usr/include/libMems/PairwiseMatchAdapter.h
/usr/include/libMems/PairwiseMatchFinder.h
/usr/include/libMems/PhyloTree.h
/usr/include/libMems/ProgressiveAligner.h
/usr/include/libMems/RepeatHash.h
/usr/include/libMems/RepeatMatch.h
/usr/include/libMems/RepeatMatchList.h
/usr/include/libMems/Scoring.h
/usr/include/libMems/SeedMasks.h
/usr/include/libMems/SeedOccurrenceList.h
/usr/include/libMems/SlotAllocator.h
/usr/include/libMems/SortedMerList.h
/usr/include/libMems/SparseAbstractMatch.h
/usr/include/libMems/SubstitutionMatrix.h
/usr/include/libMems/SuperInterval.h
/usr/include/libMems/TreeUtilities.h
/usr/include/libMems/UngappedLocalAlignment.h
/usr/include/libMems/configuration.h
/usr/include/libMems/gnAlignedSequences.h
/usr/include/libMems/gnRAWSequence.h
/usr/include/libMems/twister.h
/usr/include/libMems/HomologyHMM/algebras.h
/usr/include/libMems/HomologyHMM/dptables.h
/usr/include/libMems/HomologyHMM/homology.h
/usr/include/libMems/HomologyHMM/parameters.h
/usr/include/libMems/dmSML/aPOSIXaio.h
/usr/include/libMems/dmSML/alibc.h
/usr/include/libMems/dmSML/alinuxaio.h
/usr/include/libMems/dmSML/asyncio.h
/usr/include/libMems/dmSML/awin32aio.h
/usr/include/libMems/dmSML/buffer.h
/usr/include/libMems/dmSML/dmsort.h
/usr/include/libMems/dmSML/sml.h
/usr/include/libMems/dmSML/sorting.h
/usr/include/libMems/dmSML/timing.h
/usr/include/libMems/dmSML/util.h
/usr/lib/i386-linux-gnu/libMems.a
/usr/lib/i386-linux-gnu/libMems.so
/usr/lib/i386-linux-gnu/pkgconfig/libMems.pc
/usr/share/doc/libmems-dev/changelog.Debian.gz
/usr/share/doc/libmems-dev/changelog.Debian.i386.gz
/usr/share/doc/libmems-dev/copyright

Changelog

2018-08-27 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-8) unstable; urgency=medium
* Do not provide packages with different files
Closes: #907417
* Standards-Version: 4.2.1
2018-07-27 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-7) unstable; urgency=medium
* Make sure all header files will be installed in the right dir
2018-07-27 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-6) unstable; urgency=medium
* Add missing copyright
Closes: #904712
2018-07-18 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-5) unstable; urgency=medium
* Drop version number from package name
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
2016-11-08 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-4) unstable; urgency=medium
* Use fake watch file
* Add missing include so that BOOST_WORKAROUND is defined (thanks to
(Graham Inggs <ginggs@debian.org> for the patch)
Closes: #843628
* Add patch to really drop explicit version in package names but do not
activate the patch due to transition freeze
2016-06-30 - Gert Wollny <gw.fossdev@gmail.com>
libmems (1.6.0+4725-3) unstable; urgency=medium
[ Gert Wollny ]
* Team upload 
* d/p/05: Add patch to fix compilation with g++-6, Closes: #811870
* d/control: cme fix dpkg-control
[ Andreas Tille ]
* Set source section to science
* hardening=+bindnow
* drop unneeded overrides for d-shlibmove
2015-08-18 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-2) unstable; urgency=medium
* Add Multi-Arch: same and Pre-Depends: ${misc:Pre-Depends}
according to https://wiki.debian.org/Multiarch/Implementation
* Rename library packages for g++5 ABI transition.
* properly link to its dependencies
Closes: #795344
2015-04-17 - Andreas Tille <tille@debian.org>
libmems (1.6.0+4725-1) unstable; urgency=medium
* Initial upload (Closes: #782969)

See Also

Package Description
libmems1_1.6.0+4725-8+b1_i386.deb library to support DNA string matching and comparative genomics
libmemtailor-dev_1.0~git20160311-2_i386.deb C++ library of special purpose memory allocators (developer tools)
libmemtailor0_1.0~git20160311-2_i386.deb C++ library of special purpose memory allocators (shared library)
libmenhir-ocaml-dev_20181113-1_i386.deb Menhir library for OCaml
libmenlo-legacy-perl_1.9022-1_all.deb legacy internal and client support for Menlo
libmenlo-perl_1.9019-1_all.deb CPAN client backend
libmenu-cache-bin_1.1.0-1_i386.deb LXDE implementation of the freedesktop Menu's cache (libexec)
libmenu-cache-dev_1.1.0-1_i386.deb LXDE implementation of the freedesktop Menu's cache (devel)
libmenu-cache-doc_1.1.0-1_all.deb LXDE implementation of the freedesktop Menu's cache (docs)
libmenu-cache3_1.1.0-1_i386.deb LXDE implementation of the freedesktop Menu's cache
libmercator-0.3-4_0.3.3-5_i386.deb WorldForge terrain library
libmercator-0.3-dev_0.3.3-5_i386.deb WorldForge terrain library - development files
libmeryl-dev_0~20150903+r2013-6_i386.deb in- and out-of-core kmer counting and utilities (development lib)
libmeschach-dev_1.2b-14_i386.deb development files for meschach
libmeschach1.2_1.2b-14_i386.deb library for performing operations on matrices and vectors
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