libgenome-perl_0.06-5_all.deb


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Description

libgenome-perl - pipelines, tools, and data management for genomics

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libgenome-perl_0.06-5_all.deb
Package name libgenome-perl
Package version 0.06
Package release 5
Package architecture all
Package type deb
Category devel::lang:perl devel::library implemented-in::perl perl
Homepage https://metacpan.org/release/Genome
License -
Maintainer Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Download size 38.19 KB
Installed size 110.00 KB
This is the base namespace module for the Genome software tree.
That tree has several primary components:
Genome::Model: a data modeling pipeline management system for genomics
Genome::Model::Tools a tree of >1000 tools and tool wrappers for genomics
Genome::* a variety of sample tracking classes with an RDBMS back-end
Only the tools system is currently released.
See genome for a complete inventory of all tool packages, and for
command-line access to those tools.

Alternatives

Package Version Architecture Repository
libgenome-perl_0.06-5_all.deb 0.06 all Debian Main
libgenome-perl - - -

Requires

Name Value
libgetopt-complete-perl -
libio-string-perl -
libur-perl -
perl -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libgenome-perl_0.06-5_all.deb
Source Package libgenome-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libgenome-perl deb package:
    # sudo apt-get install libgenome-perl

Files

Path
/usr/bin/genome
/usr/bin/genome-model-tools
/usr/lib/debian-med/bin/gmt
/usr/lib/debian-med/share/man/man1/gmt.1.gz
/usr/share/doc/libgenome-perl/changelog.Debian.gz
/usr/share/doc/libgenome-perl/changelog.gz
/usr/share/doc/libgenome-perl/copyright
/usr/share/man/man1/genome-model-tools.1.gz
/usr/share/man/man1/genome.1.gz
/usr/share/man/man3/Genome.3pm.gz
/usr/share/man/man3/Genome::Env::GENOME_DB.3pm.gz
/usr/share/man/man3/Genome::Env::GENOME_SW.3pm.gz
/usr/share/man/man3/Genome::Env::GENOME_SYS_NO_CLEANUP.3pm.gz
/usr/share/man/man3/Genome::Env::GENOME_TEST_DEV.3pm.gz
/usr/share/man/man3/Genome::Model::Tools.3pm.gz
/usr/share/man/man3/Genome::Site.3pm.gz
/usr/share/man/man3/Genome::Sys.3pm.gz
/usr/share/man/man3/Genome::Vocabulary.3pm.gz
/usr/share/perl5/Genome.pm
/usr/share/perl5/Genome/Site.pm
/usr/share/perl5/Genome/Sys.pm
/usr/share/perl5/Genome/Vocabulary.pm
/usr/share/perl5/Genome/Env/GENOME_DB.pm
/usr/share/perl5/Genome/Env/GENOME_DEV_MODE.pm
/usr/share/perl5/Genome/Env/GENOME_EXAMPLES.pm
/usr/share/perl5/Genome/Env/GENOME_MODEL_DATA.pm
/usr/share/perl5/Genome/Env/GENOME_MODEL_ROOT.pm
/usr/share/perl5/Genome/Env/GENOME_MODEL_TESTDIR.pm
/usr/share/perl5/Genome/Env/GENOME_NO_REQUIRE_USER_VERIFY.pm
/usr/share/perl5/Genome/Env/GENOME_SW.pm
/usr/share/perl5/Genome/Env/GENOME_SYS_NO_CLEANUP.pm
/usr/share/perl5/Genome/Env/GENOME_TEST_DEV.pm
/usr/share/perl5/Genome/Env/GENOME_VIEW_CACHE.pm
/usr/share/perl5/Genome/Model/Tools.pm
/usr/share/perl5/Genome/Model/Tools/Example1.pm
/usr/share/perl5/Genome/Model/Tools/Example2.pm
/usr/share/perl5/Genome/Model/Tools/Install.pm
/usr/share/perl5/Genome/Model/Tools/Install/AptGet.pm
/usr/share/perl5/Genome/Model/Tools/Install/Cpanm.pm

Changelog

2018-07-05 - gregor herrmann <gregoa@debian.org>
libgenome-perl (0.06-5) unstable; urgency=medium
* Team upload.
* autopkgest: skip use.t, which fails because of UR's warnings
(cf. #838629).
* Declare compliance with Debian Policy 4.1.5.
2018-07-03 - Andreas Tille <tille@debian.org>
libgenome-perl (0.06-4) unstable; urgency=medium
* Team upload
[ Salvatore Bonaccorso ]
* debian/control: Use HTTPS transport protocol for Vcs-Git URI
[ gregor herrmann ]
* debian/copyright: change Copyright-Format 1.0 URL to HTTPS.
* Remove Olivier Sallou from Uploaders. Thanks for your work!
[ Salvatore Bonaccorso ]
* Update Vcs-* headers for switch to salsa.debian.org
[ Andreas Tille ]
* debhelper 11
* Standards-Version: 4.1.4
2015-07-05 - Andreas Tille <tille@debian.org>
libgenome-perl (0.06-3) unstable; urgency=medium
* Team upload
* Solve name space issue by moving gmt to /usr/lib/debian-med/bin
Closes: #790524
* debian/control: Recommends med-config which supports prepending
/usr/lib/debian-med/bin to PATH for Debian Med users
2015-06-09 - gregor herrmann <gregoa@debian.org>
libgenome-perl (0.06-2) unstable; urgency=medium
* Team upload.
[ gregor herrmann ]
* Strip trailing slash from metacpan URLs.
[ Salvatore Bonaccorso ]
* Update Vcs-Browser URL to cgit web frontend
[ gregor herrmann ]
* Declare compliance with Debian Policy 3.9.6.
* Add explicit build dependency on libmodule-build-perl.
2013-02-23 - Olivier Sallou <osallou@debian.org>
libgenome-perl (0.06-1) unstable; urgency=low
* Initial Release (Closes: #701467).

See Also

Package Description
libgenome0_1.3.11+svn20110227.4616-2_i386.deb toolkit for developing bioinformatic related software
libgenometools0-dev_1.5.10+ds-3_i386.deb development files for GenomeTools
libgenometools0_1.5.10+ds-3_i386.deb versatile genome analysis library
libgentlyweb-utils-java-doc_1.5-2_all.deb Documentation - java utility library used by josql
libgentlyweb-utils-java_1.5-2_all.deb java utility library used by josql
libgeo-coder-googlev3-perl_0.17-1_all.deb Perl module providing access to Google Maps v3 Geocoding API
libgeo-coder-osm-perl_0.03-2_all.deb Geocode addresses with the OpenStreetMap Nominatim API
libgeo-constants-perl_0.06-1_all.deb standard constants used by Geo perl packages
libgeo-coordinates-itm-perl_0.02-2_all.deb conversion module between lat/lon and Irish Transverse Mercator
libgeo-coordinates-osgb-perl_2.20-1_all.deb converting module between Lat/Lon and the British National Grid
libgeo-coordinates-utm-perl_0.11-2_all.deb Perl extension for Latitiude Longitude conversions
libgeo-distance-perl_0.20-4_all.deb calculate distances and closest locations
libgeo-distance-xs-perl_0.13-2+b5_i386.deb calculate distances and closest locations (XS version)
libgeo-ellipsoids-perl_0.16-1_all.deb standard Geo:: ellipsoid a, b, f and 1/f values
libgeo-functions-perl_0.07-1_all.deb standard functions for Geo perl modules
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