libfreecontact-perl_0.08-7+b1_i386.deb


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Description

libfreecontact-perl - fast protein contact predictor - binding for Perl

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libfreecontact-perl_0.08-7+b1_i386.deb
Package name libfreecontact-perl
Package version 0.08
Package release 7+b1
Package architecture i386
Package type deb
Category devel::lang:perl devel::library implemented-in::c implemented-in::perl perl role::devel-lib
Homepage https://rostlab.org/owiki/index.php/FreeContact
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 73.46 KB
Installed size 143.00 KB
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains the Perl binding.

Alternatives

Package Version Architecture Repository
libfreecontact-perl_0.08-7+b1_amd64.deb 0.08 amd64 Debian Main
libfreecontact-perl - - -

Requires

Name Value
libc6 >= 2.4
libfreecontact0v5 -
libgcc1 >= 1:3.0
perl >= 5.28.0-3
perlapi-5.28.0 -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libfreecontact-perl_0.08-7+b1_i386.deb
Source Package libfreecontact-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libfreecontact-perl deb package:
    # sudo apt-get install libfreecontact-perl

Files

Path
/usr/lib/i386-linux-gnu/perl5/5.28/FreeContact.pm
/usr/lib/i386-linux-gnu/perl5/5.28/auto/FreeContact/FreeContact.so
/usr/lib/i386-linux-gnu/perl5/5.28/auto/FreeContact/autosplit.ix
/usr/share/doc/libfreecontact-perl/README
/usr/share/doc/libfreecontact-perl/changelog.Debian.gz
/usr/share/doc/libfreecontact-perl/changelog.Debian.i386.gz
/usr/share/doc/libfreecontact-perl/changelog.gz
/usr/share/doc/libfreecontact-perl/copyright
/usr/share/doc/libfreecontact-perl/examples/demo_1000.aln.gz
/usr/share/man/man3/FreeContact.3pm.gz

Changelog

2018-09-24 - Andreas Tille <tille@debian.org>
libfreecontact-perl (0.08-7) unstable; urgency=medium
* Drop get-orig-source target
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-08-30 - Carnë Draug <carandraug+dev@gmail.com>
libfreecontact-perl (0.08-6) unstable; urgency=medium
* Team upload
[ Carnë Draug ]
* Enable all hardening flags for build.
* Enable autopkgtest
[ Andreas Tille ]
* debhelper 10
* cme fix dpkg-control
* Standards-Version: 4.1.0 (no changes needed)
2016-03-11 - Andreas Tille <tille@debian.org>
libfreecontact-perl (0.08-5) unstable; urgency=medium
* Fix __timing initialization (thanks a lot to Niko Tyni <ntyni@debian.org>
for the patch)
Closes: #812626
* cme fix dpkg-control
2015-08-24 - Andreas Tille <tille@debian.org>
libfreecontact-perl (0.08-4) unstable; urgency=medium
* Do not hardcode libfreecontact0 dependency
Closes: #796729
2015-08-21 - Andreas Tille <tille@debian.org>
libfreecontact-perl (0.08-3) unstable; urgency=medium
* cme fix dpkg-control
* add myself to Uploaders
* Priority: optional
* Rebuild against gcc-5 transitioned libfreecontact-dev
Closes: #795586
* simplify debian/rules
* DEP5 fix
2013-09-28 - Laszlo Kajan <lkajan@rostlab.org>
libfreecontact-perl (0.08-2) unstable; urgency=low
* Updated build dependency to new version of libfreecontact0-dev that fixes
#724257.
2013-09-19 - Laszlo Kajan <lkajan@rostlab.org>
libfreecontact-perl (0.08-1) unstable; urgency=low
* Initial release (Closes: #723747).

See Also

Package Description
libfreecontact0v5_1.0.21-7+b1_i386.deb fast protein contact predictor library
libfreediameter-dev_1.2.1-7_i386.deb Library for the Diameter protocol (development files)
libfreefare-bin_0.4.0-2+b2_i386.deb MIFARE card manipulations binaries
libfreefare-dev_0.4.0-2+b2_i386.deb MIFARE card manipulations library (development files)
libfreefare-doc_0.4.0-2_all.deb documentation for libfreefare
libfreefare0_0.4.0-2+b2_i386.deb MIFARE card manipulations library
libfreefem++-dev_3.61.1+dfsg1-4_i386.deb Provides the development files of the FreeFem++ FE suite
libfreefem++_3.61.1+dfsg1-4_i386.deb Provides the shared libraries of the FreeFem++ FE suite
libfreefem-dev_3.5.8-7_i386.deb Development library, header files and manpages
libfreefem-doc_3.5.8-7_all.deb Documentation for FreeFEM development
libfreefem0_3.5.8-7_i386.deb Shared libraries for FreeFEM
libfreehand-0.1-1_0.1.2-2_i386.deb Library for parsing the FreeHand file format structure
libfreehand-dev_0.1.2-2_i386.deb Library for parsing the FreeHand file format structure -- development
libfreehdl0-dev_0.0.8-2.2_i386.deb VHDL simulator for Linux (development headers)
libfreehdl0_0.0.8-2.2_i386.deb VHDL simulator for Linux (shared libraries)
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