libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_i386.deb


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Description

libfastahack-dev - library for indexing and sequence extraction from FASTA files (devel)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_i386.deb
Package name libfastahack-dev
Package version 0.0+git20160702.bbc645f+dfsg
Package release 6
Package architecture i386
Package type deb
Category devel::library libdevel role::devel-lib
Homepage https://github.com/ekg/fastahack
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 25.27 KB
Installed size 97.00 KB
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files.  The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files.  The library automatically
handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations.  This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
This is the development package containing the statically linked
library and the header files.

Alternatives

Package Version Architecture Repository
libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_amd64.deb 0.0+git20160702.bbc645f+dfsg amd64 Debian Main
libfastahack-dev - - -

Requires

Name Value
libfastahack0 = 0.0+git20160702.bbc645f+dfsg-6

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_i386.deb
Source Package libfastahack

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libfastahack-dev deb package:
    # sudo apt-get install libfastahack-dev

Files

Path
/usr/include/fastahack/Fasta.h
/usr/include/fastahack/LargeFileSupport.h
/usr/include/fastahack/Region.h
/usr/include/fastahack/split.h
/usr/lib/i386-linux-gnu/libfastahack.a
/usr/lib/i386-linux-gnu/libfastahack.so
/usr/lib/i386-linux-gnu/pkgconfig/libfastahack.pc
/usr/share/doc/libfastahack-dev/changelog.Debian.gz
/usr/share/doc/libfastahack-dev/copyright

Changelog

2018-12-02 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-6) unstable; urgency=medium
* Set some symbols optional to make build more robust
Closes: #915271
* Secure URI in copyright format
2018-09-13 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-5) unstable; urgency=medium
[ Gianfranco Costamagna ]
* Make some symbols on ppc64el as optional, when built with -O3
(e.g. Ubuntu)
[ Andreas Tille ]
* Install missing header file split.h
* Standards-Version: 4.2.1
2018-08-26 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-4) unstable; urgency=medium
* Fix symbols file for mips64el and ppc64el
Closes: #907210
2018-08-25 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-3) unstable; urgency=medium
* Provide symbols for selected architectures only
Closes: #907210
2018-08-18 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-2) unstable; urgency=medium
[ Adrian Bunk ]
* Fix Makefile.am
Closes: #906481
[ Andreas Tille ]
* Standards-Version: 4.2.0
* d/rules: Drop --no-parallel
* drop +dfsg from symbols file
2018-07-14 - Andreas Tille <tille@debian.org>
libfastahack (0.0+git20160702.bbc645f+dfsg-1) unstable; urgency=medium
* d/watch: Use git mode
* drop now unneeded get-orig-source target
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Force --no-parallel since package would not build otherwise
* hardening=+all
* d/rules: do not parse d/changelog
* Add symbols file
2016-07-05 - Andreas Tille <tille@debian.org>
libfastahack (0.0+20160702-1) unstable; urgency=medium
* Initial release (Closes: #827978)

See Also

Package Description
libfastahack0_0.0+git20160702.bbc645f+dfsg-6_i386.deb library for indexing and sequence extraction from FASTA files (lib)
libfastinfoset-java_1.2.12-3_all.deb Java library implementing the Fast Infoset standard
libfastjet-dev_3.0.6+dfsg-3+b13_i386.deb Development files of FastJet
libfastjet-fortran-dev_3.0.6+dfsg-3+b13_i386.deb Fortran bindings of FastJet - development files
libfastjet-fortran0_3.0.6+dfsg-3+b13_i386.deb Fortran bindings of FastJet
libfastjet0v5_3.0.6+dfsg-3+b13_i386.deb Fast C++ code for the kt and other jet algorithms
libfastjetplugins-dev_3.0.6+dfsg-3+b13_i386.deb FastJet plugins - development files
libfastjetplugins0_3.0.6+dfsg-3+b13_i386.deb FastJet plugins
libfastjettools-dev_3.0.6+dfsg-3+b13_i386.deb Tools for FastJet - development files
libfastjettools0_3.0.6+dfsg-3+b13_i386.deb Tools for FastJet
libfastjson-dev_0.99.8-2_i386.deb fast json library for C - development files
libfastjson4_0.99.8-2_i386.deb fast json library for C
libfastutil-java-doc_8.2.2-1_all.deb API documentation for libfastutil-java
libfastutil-java_8.2.2-1_all.deb Java API providing type-specific maps, sets, lists and queues
libfathom-dev_1.0+git.20190120.0439ca-1_i386.deb Library for probing Syzygy tablebases (development files)
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