libbiojava4.0-java_4.2.12+dfsg-2_all.deb


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Description

libbiojava4.0-java - Java API to biological data and applications (version 4)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libbiojava4.0-java_4.2.12+dfsg-2_all.deb
Package name libbiojava4.0-java
Package version 4.2.12+dfsg
Package release 2
Package architecture all
Package type deb
Category java
Homepage http://www.biojava.org
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 5.20 MB
Installed size 5.54 MB
This package presents the Open Source Java API to biological databases
and a series of mostly sequence-based algorithms.
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data. It includes objects for manipulating
sequences, file parsers, server support, access to BioSQL
and Ensembl databases, and powerful analysis and statistical routines
including a dynamic programming toolkit.

Alternatives

Package Version Architecture Repository
libbiojava4.0-java_4.2.12+dfsg-2_all.deb 4.2.12+dfsg all Debian Main
libbiojava4.0-java - - -

Requires

Name Value
junit4 -
libbytecode-java -
libcommons-cli-java -
libcommons-codec-java -
libcommons-collections3-java -
libcommons-dbcp-java -
libcommons-logging-java -
libcommons-math-java -
libcommons-pool-java -
libguava-java >= 17.0
libhsqldb-java -
libitext5-java >= 5.4.1
libjaxb-api-java -
libjaxb-java -
libjgrapht-java -
libjgrapht0.8-java -
libjmol-java >= 14.6.4
libjson-simple-java -
liblog4j2-java -
libnetx-java -
libslf4j-java -
libvecmath-java -
libxmlunit-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbiojava4.0-java_4.2.12+dfsg-2_all.deb
Source Package biojava4-live

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbiojava4.0-java deb package:
    # sudo apt-get install libbiojava4.0-java

Files

Path
/usr/share/doc/libbiojava4.0-java/README.Debian
/usr/share/doc/libbiojava4.0-java/changelog.Debian.gz
/usr/share/doc/libbiojava4.0-java/copyright
/usr/share/java/biojava4-aa-prop-4.2.12.jar
/usr/share/java/biojava4-aa-prop.jar
/usr/share/java/biojava4-alignment-4.2.12.jar
/usr/share/java/biojava4-alignment.jar
/usr/share/java/biojava4-core-4.2.12.jar
/usr/share/java/biojava4-core.jar
/usr/share/java/biojava4-forester-4.2.12.jar
/usr/share/java/biojava4-forester.jar
/usr/share/java/biojava4-genome-4.2.12.jar
/usr/share/java/biojava4-genome.jar
/usr/share/java/biojava4-jcolorbrewer-4.2.12.jar
/usr/share/java/biojava4-jcolorbrewer.jar
/usr/share/java/biojava4-modfinder-4.2.12.jar
/usr/share/java/biojava4-modfinder.jar
/usr/share/java/biojava4-ontology-4.2.12.jar
/usr/share/java/biojava4-ontology.jar
/usr/share/java/biojava4-phylo-4.2.12.jar
/usr/share/java/biojava4-phylo.jar
/usr/share/java/biojava4-protein-comparison-tool-4.2.12.jar
/usr/share/java/biojava4-protein-comparison-tool.jar
/usr/share/java/biojava4-protein-disorder-4.2.12.jar
/usr/share/java/biojava4-protein-disorder.jar
/usr/share/java/biojava4-sequencing-4.2.12.jar
/usr/share/java/biojava4-sequencing.jar
/usr/share/java/biojava4-structure-4.2.12.jar
/usr/share/java/biojava4-structure-gui-4.2.12.jar
/usr/share/java/biojava4-structure-gui.jar
/usr/share/java/biojava4-structure.jar
/usr/share/java/biojava4-survival-4.2.12.jar
/usr/share/java/biojava4-survival.jar
/usr/share/java/biojava4-ws-4.2.12.jar
/usr/share/java/biojava4-ws.jar

Changelog

2019-01-18 - Michael R. Crusoe <michael.crusoe@gmail.com>
biojava4-live (4.2.12+dfsg-2) unstable; urgency=medium
* Team upload.
* Switch to libnetx-java from icedtea-netx and downgrade to a Suggests.
It is only needed by biojava-structure-gui for one operation, which is
done by reflection.
* Replace embedded copy of JavaScript libraries with symlinks to the
dependency of default-jdk-doc.
* debian/copyright: added explanation for repacked upstream tarball
2019-01-14 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.12+dfsg-1) unstable; urgency=medium
* Team upload.
[ Jelmer Vernooń≥ ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
[ tony mancill ]
* Add build-dep on libjaxb-api-java and libjaxb-java
* Add jaxb-api and jaxb-impl JARs to classpaths in debian/build.xml
Closes: #917655, #917667
* Drop --add-modules java.se.ee from javadoc task
2018-02-10 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.11+dfsg-1) unstable; urgency=medium
* New upstream release
d/control: move standards to 4.1.3
2017-09-11 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-2) unstable; urgency=medium
* Fix openjdk 1.8/1.9 compilation/testing (Closes: #875334).
* d/control: switch policy to 4.0.0
2017-05-15 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-1) unstable; urgency=medium
* New upstream release
2016-12-23 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.5+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
Closes: #846581
* Moved packaging from SVN to Git
2016-12-20 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-2) unstable; urgency=medium
* d/control: add jgrapht as required dependency instead of suggests
(Closes: #848768)
2016-12-05 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-1) unstable; urgency=medium
*  New upstream release
2016-11-24 - Andreas Tille <tille@debian.org>
biojava4-live (4.1.0+dfsg-4) unstable; urgency=medium
* Team upload.
* d/rules: export LC_ALL=C.UTF-8
* Fix clean target
* d/watch: do not report beta versions
* d/rules: tolerate test failures of biojava-core which happens in stretch
sbuild environments for no obvious reasons
Closes: #843712
* cme fix dpkg-control
* debhelper 10
2015-08-17 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.1.0+dfsg-3) unstable; urgency=medium
* Fix FTBS unmappable characters (Closes: #795849).

See Also

Package Description
libbiometric-dev_0.9.61-2_i386.deb Biometric Identification DRIVER API - development files
libbiometric0_0.9.61-2_i386.deb Biometric Identification library
libbioparser-dev_1.2.1-1_all.deb library for parsing several formats in bioinformatics
libbiosig-dev_1.9.3-2_i386.deb I/O library for biomedical data - development files
libbiosig2_1.9.3-2_i386.deb I/O library for biomedical data - dynamic library
libbison-dev_3.3.2.dfsg-1_i386.deb YACC-compatible parser generator - development library
libbit-vector-minimal-perl_1.3-5_all.deb object-oriented wrapper around vec()
libbit-vector-perl_7.4-1+b5_i386.deb Perl module for bit vectors and more
libbitmask-dev_2.0-3_i386.deb header files and docs for libbitmask
libbitmask1_2.0-3_i386.deb supports multi-word bitmask operations
libbitstream-dev_1.5-1_all.deb C headers giving access to binary streams like MPEG or DVB
libbitstring-ocaml-dev_2.0.4-2+b2_i386.deb Erlang-style bitstrings for OCaml (development files)
libbitstring-ocaml_2.0.4-2+b2_i386.deb Erlang-style bitstrings for OCaml (runtime)
libbjack-ocaml-dev_0.1.4-2+b3_i386.deb OCaml blocking interface to jack audio connection kit
libbjack-ocaml_0.1.4-2+b3_i386.deb OCaml blocking interface to jack audio connection kit
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