libbiojava4-java_4.2.12+dfsg-2_all.deb


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Description

libbiojava4-java - Java API to biological data and applications (default version)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libbiojava4-java_4.2.12+dfsg-2_all.deb
Package name libbiojava4-java
Package version 4.2.12+dfsg
Package release 2
Package architecture all
Package type deb
Category java
Homepage http://www.biojava.org
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 4.46 KB
Installed size 16.00 KB
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data. It includes objects for manipulating
sequences, file parsers, server support, access to BioSQL
and Ensembl databases, and powerful analysis and statistical routines
including a dynamic programming toolkit.
BioJava is provided by a vibrant community which meets annually at
the Bioinformatics Open Source Conference (BOSC) that traditionally
accompanies the Intelligent Systems in Molecular Biology (ISMB)
meeting. Much like BioPerl, the employment of this library is valuable
for everybody active in the field because of the many tricks of the
trade one learns just by communicating on the mailing list.
This is a wrapper package which should enable smooth upgrades to new
versions.

Alternatives

Package Version Architecture Repository
libbiojava4-java_4.2.12+dfsg-2_all.deb 4.2.12+dfsg all Debian Main
libbiojava4-java - - -

Requires

Name Value
libbiojava4.0-java -

Provides

Name Value
libbiojava4-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbiojava4-java_4.2.12+dfsg-2_all.deb
Source Package biojava4-live

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbiojava4-java deb package:
    # sudo apt-get install libbiojava4-java

Files

Path
/usr/share/doc/libbiojava4-java/changelog.Debian.gz
/usr/share/doc/libbiojava4-java/copyright
/usr/share/lintian/overrides/libbiojava4-java

Changelog

2019-01-18 - Michael R. Crusoe <michael.crusoe@gmail.com>
biojava4-live (4.2.12+dfsg-2) unstable; urgency=medium
* Team upload.
* Switch to libnetx-java from icedtea-netx and downgrade to a Suggests.
It is only needed by biojava-structure-gui for one operation, which is
done by reflection.
* Replace embedded copy of JavaScript libraries with symlinks to the
dependency of default-jdk-doc.
* debian/copyright: added explanation for repacked upstream tarball
2019-01-14 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.12+dfsg-1) unstable; urgency=medium
* Team upload.
[ Jelmer Vernooń≥ ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
[ tony mancill ]
* Add build-dep on libjaxb-api-java and libjaxb-java
* Add jaxb-api and jaxb-impl JARs to classpaths in debian/build.xml
Closes: #917655, #917667
* Drop --add-modules java.se.ee from javadoc task
2018-02-10 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.11+dfsg-1) unstable; urgency=medium
* New upstream release
d/control: move standards to 4.1.3
2017-09-11 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-2) unstable; urgency=medium
* Fix openjdk 1.8/1.9 compilation/testing (Closes: #875334).
* d/control: switch policy to 4.0.0
2017-05-15 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-1) unstable; urgency=medium
* New upstream release
2016-12-23 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.5+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
Closes: #846581
* Moved packaging from SVN to Git
2016-12-20 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-2) unstable; urgency=medium
* d/control: add jgrapht as required dependency instead of suggests
(Closes: #848768)
2016-12-05 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-1) unstable; urgency=medium
*  New upstream release
2016-11-24 - Andreas Tille <tille@debian.org>
biojava4-live (4.1.0+dfsg-4) unstable; urgency=medium
* Team upload.
* d/rules: export LC_ALL=C.UTF-8
* Fix clean target
* d/watch: do not report beta versions
* d/rules: tolerate test failures of biojava-core which happens in stretch
sbuild environments for no obvious reasons
Closes: #843712
* cme fix dpkg-control
* debhelper 10
2015-08-17 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.1.0+dfsg-3) unstable; urgency=medium
* Fix FTBS unmappable characters (Closes: #795849).

See Also

Package Description
libbiojava4.0-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (version 4)
libbiometric-dev_0.9.61-2_i386.deb Biometric Identification DRIVER API - development files
libbiometric0_0.9.61-2_i386.deb Biometric Identification library
libbioparser-dev_1.2.1-1_all.deb library for parsing several formats in bioinformatics
libbiosig-dev_1.9.3-2_i386.deb I/O library for biomedical data - development files
libbiosig2_1.9.3-2_i386.deb I/O library for biomedical data - dynamic library
libbison-dev_3.3.2.dfsg-1_i386.deb YACC-compatible parser generator - development library
libbit-vector-minimal-perl_1.3-5_all.deb object-oriented wrapper around vec()
libbit-vector-perl_7.4-1+b5_i386.deb Perl module for bit vectors and more
libbitmask-dev_2.0-3_i386.deb header files and docs for libbitmask
libbitmask1_2.0-3_i386.deb supports multi-word bitmask operations
libbitstream-dev_1.5-1_all.deb C headers giving access to binary streams like MPEG or DVB
libbitstring-ocaml-dev_2.0.4-2+b2_i386.deb Erlang-style bitstrings for OCaml (development files)
libbitstring-ocaml_2.0.4-2+b2_i386.deb Erlang-style bitstrings for OCaml (runtime)
libbjack-ocaml-dev_0.1.4-2+b3_i386.deb OCaml blocking interface to jack audio connection kit
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