libbio-primerdesigner-perl_0.07-6_all.deb


Advertisement

Description

libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libbio-primerdesigner-perl_0.07-6_all.deb
Package name libbio-primerdesigner-perl
Package version 0.07
Package release 6
Package architecture all
Package type deb
Category devel::lang:perl devel::library implemented-in::perl perl role::shared-lib
Homepage https://metacpan.org/release/Bio-PrimerDesigner
License -
Maintainer Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Download size 44.33 KB
Installed size 130.00 KB
Bio::PrimerDesigner provides a low-level interface to the primer3 and epcr
binary executables and supplies methods to return the results. In addition to
accessing local installations of primer3 or e-PCR, it also offers the ability
to accessing the primer3 binary via a remote server.

Alternatives

Package Version Architecture Repository
libbio-primerdesigner-perl_0.07-6_all.deb 0.07 all Debian Main
libbio-primerdesigner-perl - - -

Requires

Name Value
libclass-base-perl -
libreadonly-perl -
libwww-perl -
ncbi-epcr -
perl -
primer3 -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbio-primerdesigner-perl_0.07-6_all.deb
Source Package libbio-primerdesigner-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-primerdesigner-perl deb package:
    # sudo apt-get install libbio-primerdesigner-perl

Files

Path
/usr/bin/primer_designer
/usr/share/doc/libbio-primerdesigner-perl/changelog.Debian.gz
/usr/share/doc/libbio-primerdesigner-perl/copyright
/usr/share/man/man1/primer_designer.1p.gz
/usr/share/man/man3/Bio::PrimerDesigner.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm.gz
/usr/share/perl5/Bio/PrimerDesigner.pm
/usr/share/perl5/Bio/PrimerDesigner/Config.pm
/usr/share/perl5/Bio/PrimerDesigner/Remote.pm
/usr/share/perl5/Bio/PrimerDesigner/Result.pm
/usr/share/perl5/Bio/PrimerDesigner/Tables.pm
/usr/share/perl5/Bio/PrimerDesigner/epcr.pm
/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm
/usr/share/perl5/Bio/PrimerDesigner/primer3.pm

Changelog

2018-07-18 - Andreas Tille <tille@debian.org>
libbio-primerdesigner-perl (0.07-6) unstable; urgency=medium
* Team upload.
[ Salvatore Bonaccorso ]
* Update Vcs-* headers for switch to salsa.debian.org
[ Andreas Tille ]
* debhelper 11
* Standards-Version: 4.1.5
2016-11-11 - gregor herrmann <gregoa@debian.org>
libbio-primerdesigner-perl (0.07-5) unstable; urgency=medium
[ gregor herrmann ]
* debian/rules: use 'wildcard' instead of 'shell echo'.
[ Salvatore Bonaccorso ]
* debian/control: Use HTTPS transport protocol for Vcs-Git URI
[ gregor herrmann ]
* Change bugtracker URL(s) to HTTPS.
* debian/copyright: change Copyright-Format 1.0 URL to HTTPS.
* Remove Jonathan Yu from Uploaders. Thanks for your work!
* Remove Ryan Niebur from Uploaders. Thanks for your work!
* Skip t/remote.t during autopkgtest as well. (Closes: #843993)
* Declare compliance with Debian Policy 3.9.8.
* Bump debhelper compatibility level to 9.
* Turn off DNS queries during build and autopkgtests completely.
* Add a patch to fix spelling mistakes.
2015-06-06 - Niko Tyni <ntyni@debian.org>
libbio-primerdesigner-perl (0.07-4) unstable; urgency=medium
* Team upload.
[ gregor herrmann ]
* Strip trailing slash from metacpan URLs.
[ Salvatore Bonaccorso ]
* Update Vcs-Browser URL to cgit web frontend
[ Niko Tyni ]
* Declare the package autopkgtestable
* Update to Standards-Version 3.9.6
* Add explicit build dependency on libmodule-build-perl
2013-09-03 - Damyan Ivanov <dmn@debian.org>
libbio-primerdesigner-perl (0.07-3) unstable; urgency=low
* Team upload
* add patch fixing hash manipulation inside each.
Fixes test failures with perl 5.18 (Closes: #711426)
2013-08-07 - gregor herrmann <gregoa@debian.org>
libbio-primerdesigner-perl (0.07-2) unstable; urgency=low
[ Ryan Niebur ]
* Email change: Jonathan Yu -> jawnsy@cpan.org
* Email change: Ryan Niebur -> ryan@debian.org
[ gregor herrmann ]
* debian/control: Changed: (build-)depend on perl instead of perl-
modules.
* Re-wrap long description.
* Don't install empty Bio::PrimerDesigner::Config.3pm manpage; thanks
lintian.
* Remove alternative (build) dependencies that are already satisfied
in oldstable.
[ Ansgar Burchardt ]
* debian/control: Convert Vcs-* fields to Git.
[ gregor herrmann ]
* debian/control: update {versioned,alternative} (build) dependencies.
[ Salvatore Bonaccorso ]
* Change search.cpan.org based URIs to metacpan.org based URIs
[ gregor herrmann ]
* Switch to "3.0 (quilt)" source format.
* Add a patch to use Module::Build's args() instead of Getopt::Long.
(Closes: #718120)
* debian/copyright: switch formatting to Copyright-Format 1.0.
* Update debian/rules and remove debian/clean.
* Bump debhelper compatibility level to 8.
* Declare compliance with Debian Policy 3.9.4.
2009-08-04 - Charles Plessy <plessy@debian.org>
libbio-primerdesigner-perl (0.07-1) unstable; urgency=low
* New upstream release (no changes on Linux systems).
[ Jonathan Yu ]
* Standards-Version 3.8.2
* Added myself to Uploaders.
* Do real clean to clean things up (get rid of the generated Makefile)
[ Nathan Handler ]
* debian/watch: Update to ignore development releases.
[ Charles Plessy ]
* Refreshed and prettified debian/copyright.
* Restored the skipping of the remote.t test in debian/rules after it
was factorised using Debhelper’s ”dh” command.
[ Ryan Niebur ]
* Use --buildsystem=perl_build in debian/rules.
* Test if Build is present before calling dh_auto_clean in debian/rules.
(Temporary workaround for debhelper bug #539848.)
* Add myself to Uploaders

See Also

Package Description
libbio-samtools-perl_1.43-2_i386.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-4_i386.deb Perl extension for reading and writing SCF sequence files
libbio-tools-phylo-paml-perl_1.7.3-2_all.deb Bioperl interface to the PAML suite
libbio-tools-run-alignment-clustalw-perl_1.7.4-1_all.deb Bioperl interface to Clustal W
libbio-tools-run-alignment-tcoffee-perl_1.7.4-1_all.deb Bioperl interface to T-Coffee
libbiococoa-dev_2.2.2-4+b1_i386.deb Bioinformatics framework for GNUstep and Cocoa (development files)
libbiococoa2_2.2.2-4+b1_i386.deb Bioinformatics framework for GNUstep and Cocoa (library files)
libbiojava-java-demos_1.7.1-8_all.deb Example programs for BioJava
libbiojava-java-doc_1.7.1-8_all.deb [Biology] Documentation for BioJava
libbiojava-java_1.7.1-8_all.deb Java API to biological data and applications (default version)
libbiojava1.7-java_1.7.1-8_all.deb Java API to biological data and applications (version 1.7)
libbiojava4-java-doc_4.2.12+dfsg-2_all.deb [Biology] Documentation for BioJava
libbiojava4-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (default version)
libbiojava4.0-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (version 4)
libbiometric-dev_0.9.61-2_i386.deb Biometric Identification DRIVER API - development files
Advertisement
Advertisement