libbio-perl-run-perl_1.7.2-4_all.deb


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Description

libbio-perl-run-perl - BioPerl wrappers: modules

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libbio-perl-run-perl_1.7.2-4_all.deb
Package name libbio-perl-run-perl
Package version 1.7.2
Package release 4
Package architecture all
Package type deb
Category devel::lang:perl devel::library implemented-in::perl perl
Homepage https://metacpan.org/release/BioPerl-Run
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 730.90 KB
Installed size 2.21 MB
Contains modules that provide a Perl interface to various bioinformatics
applications to allow them to be used with common BioPerl objects.

Alternatives

Package Version Architecture Repository
libbio-perl-run-perl_1.7.2-4_all.deb 1.7.2 all Debian Main
libbio-perl-run-perl - - -

Requires

Name Value
libbio-perl-perl >= 1.7.1-1
perl -

Replaces

Name Value
libbio-perl-perl << 1.7.1-1

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbio-perl-run-perl_1.7.2-4_all.deb
Source Package bioperl-run

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-perl-run-perl deb package:
    # sudo apt-get install libbio-perl-run-perl

Files

Path
/usr/share/doc/libbio-perl-run-perl/changelog.Debian.gz
/usr/share/doc/libbio-perl-run-perl/changelog.gz
/usr/share/doc/libbio-perl-run-perl/copyright
/usr/share/man/man3/Bio::DB::ESoap.3pm.gz
/usr/share/man/man3/Bio::DB::ESoap::WSDL.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::LinkAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz
/usr/share/man/man3/Bio::Factory::EMBOSS.3pm.gz
/usr/share/man/man3/Bio::Installer::EMBOSS.3pm.gz
/usr/share/man/man3/Bio::Installer::Generic.3pm.gz
/usr/share/man/man3/Bio::Installer::Hyphy.3pm.gz
/usr/share/man/man3/Bio::Installer::Muscle.3pm.gz
/usr/share/man/man3/Bio::Installer::Probcons.3pm.gz
/usr/share/man/man3/Bio::Installer::SLR.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Amap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::DBA.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Gmap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Kalign.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Lagan.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::MAFFT.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::MSAProbs.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Muscle.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Probalign.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Probcons.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Proda.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Sim4.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Analysis.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AssemblerBase.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BEDTools.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BEDTools::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BWA.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BWA::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BlastPlus.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Bowtie.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Bowtie::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Cap3.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Coil.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::EMBOSSApplication.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Ensembl.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Eponine.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::FootPrinter.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genemark.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genewise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genscan.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Glimmer.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Infernal.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::MCS.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Maq.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Maq::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Mdust.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Meme.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Minimo.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Newbler.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phrap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Gerp.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Gumby.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::LVB.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::QuickTree.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::SLR.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Semphy.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Primer3.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Promoterwise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Pseudowise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::RNAMotif.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::RepeatMasker.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Samtools.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Samtools::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Seg.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Simprot.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneNCBIBlast.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneWUBlast.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::TigrAssembler.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Tmhmm.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::WrapperBase.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::tRNAscanSE.3pm.gz
/usr/share/perl5/Bio/DB/ESoap.pm
/usr/share/perl5/Bio/DB/SoapEUtilities.pm
/usr/share/perl5/Bio/DB/ESoap/WSDL.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/LinkAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/Result.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
/usr/share/perl5/Bio/Factory/EMBOSS.pm
/usr/share/perl5/Bio/Installer/EMBOSS.pm
/usr/share/perl5/Bio/Installer/Generic.pm
/usr/share/perl5/Bio/Installer/Hyphy.pm
/usr/share/perl5/Bio/Installer/Muscle.pm
/usr/share/perl5/Bio/Installer/Probcons.pm
/usr/share/perl5/Bio/Installer/SLR.pm
/usr/share/perl5/Bio/Tools/Run/Analysis.pm
/usr/share/perl5/Bio/Tools/Run/AnalysisFactory.pm
/usr/share/perl5/Bio/Tools/Run/AssemblerBase.pm
/usr/share/perl5/Bio/Tools/Run/BEDTools.pm
/usr/share/perl5/Bio/Tools/Run/BWA.pm
/usr/share/perl5/Bio/Tools/Run/BlastPlus.pm
/usr/share/perl5/Bio/Tools/Run/Bowtie.pm
/usr/share/perl5/Bio/Tools/Run/Cap3.pm
/usr/share/perl5/Bio/Tools/Run/Coil.pm
/usr/share/perl5/Bio/Tools/Run/EMBOSSApplication.pm
/usr/share/perl5/Bio/Tools/Run/EMBOSSacd.pm
/usr/share/perl5/Bio/Tools/Run/ERPIN.pm
/usr/share/perl5/Bio/Tools/Run/Ensembl.pm
/usr/share/perl5/Bio/Tools/Run/Eponine.pm
/usr/share/perl5/Bio/Tools/Run/FootPrinter.pm
/usr/share/perl5/Bio/Tools/Run/Genemark.pm
/usr/share/perl5/Bio/Tools/Run/Genewise.pm
/usr/share/perl5/Bio/Tools/Run/Genscan.pm
/usr/share/perl5/Bio/Tools/Run/Glimmer.pm
/usr/share/perl5/Bio/Tools/Run/Hmmer.pm
/usr/share/perl5/Bio/Tools/Run/Infernal.pm
/usr/share/perl5/Bio/Tools/Run/MCS.pm
/usr/share/perl5/Bio/Tools/Run/Maq.pm
/usr/share/perl5/Bio/Tools/Run/Match.pm
/usr/share/perl5/Bio/Tools/Run/Mdust.pm
/usr/share/perl5/Bio/Tools/Run/Meme.pm
/usr/share/perl5/Bio/Tools/Run/Minimo.pm
/usr/share/perl5/Bio/Tools/Run/Newbler.pm
/usr/share/perl5/Bio/Tools/Run/Phrap.pm
/usr/share/perl5/Bio/Tools/Run/Primate.pm
/usr/share/perl5/Bio/Tools/Run/Primer3.pm
/usr/share/perl5/Bio/Tools/Run/Prints.pm
/usr/share/perl5/Bio/Tools/Run/Profile.pm
/usr/share/perl5/Bio/Tools/Run/Promoterwise.pm
/usr/share/perl5/Bio/Tools/Run/Pseudowise.pm
/usr/share/perl5/Bio/Tools/Run/RNAMotif.pm
/usr/share/perl5/Bio/Tools/Run/RepeatMasker.pm
/usr/share/perl5/Bio/Tools/Run/Samtools.pm
/usr/share/perl5/Bio/Tools/Run/Seg.pm
/usr/share/perl5/Bio/Tools/Run/Signalp.pm
/usr/share/perl5/Bio/Tools/Run/Simprot.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneBlast.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneNCBIBlast.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneWUBlast.pm
/usr/share/perl5/Bio/Tools/Run/TigrAssembler.pm
/usr/share/perl5/Bio/Tools/Run/Tmhmm.pm
/usr/share/perl5/Bio/Tools/Run/TribeMCL.pm
/usr/share/perl5/Bio/Tools/Run/Vista.pm
/usr/share/perl5/Bio/Tools/Run/WrapperBase.pm
/usr/share/perl5/Bio/Tools/Run/tRNAscanSE.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Amap.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Blat.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/DBA.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Exonerate.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Gmap.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Kalign.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Lagan.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/MAFFT.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/MSAProbs.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Muscle.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Pal2Nal.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Probalign.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Probcons.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Proda.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Sim4.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/StandAloneFasta.pm
/usr/share/perl5/Bio/Tools/Run/Analysis/soap.pm
/usr/share/perl5/Bio/Tools/Run/AnalysisFactory/soap.pm
/usr/share/perl5/Bio/Tools/Run/BEDTools/Config.pm
/usr/share/perl5/Bio/Tools/Run/BWA/Config.pm
/usr/share/perl5/Bio/Tools/Run/BlastPlus/Config.pm
/usr/share/perl5/Bio/Tools/Run/Bowtie/Config.pm
/usr/share/perl5/Bio/Tools/Run/Maq/Config.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/FastTree.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Gerp.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Gumby.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/LVB.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PhyloBase.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phyml.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/QuickTree.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Raxml.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/SLR.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Semphy.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/Base.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/REL.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Njtree/Best.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Base.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Consense.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
/usr/share/perl5/Bio/Tools/Run/Samtools/Config.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
/usr/share/perl5/Bio/Tools/Run/WrapperBase/CommandExts.pm

Changelog

2018-09-14 - Andreas Tille <tille@debian.org>
bioperl-run (1.7.2-4) unstable; urgency=medium
* (Build-)Depends: ncoils
* do not run tests parallel to get sensibly sorted output
* Allow MPI oversubscription (as in phyml build since phyml caused
problems inside build time tests)
This is also not reliable - skip phyml test at all
Closes: #906337
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Fix Homepage
* Lintian-override for script-with-language-extension
2018-01-26 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
bioperl-run (1.7.2-3) unstable; urgency=medium
* Drop adjust_bowtie_tests.patch, Closes: #887578
* Bump Standards-Version to 4.1.3 (no changes needed)
2017-12-07 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
bioperl-run (1.7.2-2) unstable; urgency=medium
* Team upload
* Add adjust_bowtie_tests.patch fixing failing tests for Bowtie
Closes: #880347
* Bump Standards-Version to 4.1.2, apply cme fix dpkg
2017-09-20 - Andreas Tille <tille@debian.org>
bioperl-run (1.7.2-1) unstable; urgency=medium
* New upstream version
* Convert packaging from SVN to Git
* For some reason Ensembl.t test is executed in autopkgtest run even
if it should be skipped due to missing preconditions
(http://search.cpan.org/~cjfields/Bio-EUtilities-1.72/lib/Bio/DB/EUtilities.pm)
The test will now be fully removed to make sure it is skipped.
* Standards-Version: 4.1.0 (no changes needed)
* Do not try to run bowtie tests with wrong bowtie call
Closes: #868073
2017-01-13 - Andreas Tille <tille@debian.org>
bioperl-run (1.7.1-3) unstable; urgency=medium
* s/Conflicts/Breaks/
Closes: #850029
2017-01-03 - Andreas Tille <tille@debian.org>
bioperl-run (1.7.1-2) unstable; urgency=medium
* Conflicts: libbio-perl-perl (<< 1.7.1-1)
Closes: #850029
2016-12-21 - Andreas Tille <tille@debian.org>
bioperl-run (1.7.1-1) unstable; urgency=medium
* New upstream version
* Testsuite: autopkgtest-pkg-perl
* cme fix dpkg-control
* Enable lots of tests
* Module Bio::Tools::Run::WrapperBase was taken over from BioPerl into
bioperl-run in commit acd57a7d14112c5fd2cd979005b072efdaf57679 which is
taken over in quilt patch
* Fix homepage
* d/watch:
- version=4
- Fix versionmangling
* Build-Depends: raxml
* Update copyright
* debhelper 10
2015-06-23 - Charles Plessy <plessy@debian.org>
bioperl-run (1.6.9-3) unstable; urgency=medium
[ Charles Plessy ]
* Build-depend on libmodule-build-perl, Closes: #788888.
[ Andreas Tille ]
* Compliant with Standards-Version: 3.9.6
2013-11-15 - Andreas Tille <tille@debian.org>
bioperl-run (1.6.9-2) unstable; urgency=low
* debian/source/format: 3.0 (quilt)
* debian/control:
- cme fix dpkg-control
- canonical Vcs URLs
- debhelper 9
* debian/README.source: removed because redundant
* debian/copyright: DEP5
* debian/watch: Point download location to github which provides more
reliable version numbering than CPAN which would have needed a more
complex version mangling
* refreshed quilt patches to get rid of fuzz

See Also

Package Description
libbio-primerdesigner-perl_0.07-6_all.deb Perl module to design PCR primers using primer3 and epcr
libbio-samtools-perl_1.43-2_i386.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-4_i386.deb Perl extension for reading and writing SCF sequence files
libbio-tools-phylo-paml-perl_1.7.3-2_all.deb Bioperl interface to the PAML suite
libbio-tools-run-alignment-clustalw-perl_1.7.4-1_all.deb Bioperl interface to Clustal W
libbio-tools-run-alignment-tcoffee-perl_1.7.4-1_all.deb Bioperl interface to T-Coffee
libbiococoa-dev_2.2.2-4+b1_i386.deb Bioinformatics framework for GNUstep and Cocoa (development files)
libbiococoa2_2.2.2-4+b1_i386.deb Bioinformatics framework for GNUstep and Cocoa (library files)
libbiojava-java-demos_1.7.1-8_all.deb Example programs for BioJava
libbiojava-java-doc_1.7.1-8_all.deb [Biology] Documentation for BioJava
libbiojava-java_1.7.1-8_all.deb Java API to biological data and applications (default version)
libbiojava1.7-java_1.7.1-8_all.deb Java API to biological data and applications (version 1.7)
libbiojava4-java-doc_4.2.12+dfsg-2_all.deb [Biology] Documentation for BioJava
libbiojava4-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (default version)
libbiojava4.0-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (version 4)
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