libbio-asn1-entrezgene-perl_1.720-2_all.deb


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Description

libbio-asn1-entrezgene-perl - parser for NCBI Entrez Gene and NCBI Sequence records

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename libbio-asn1-entrezgene-perl_1.720-2_all.deb
Package name libbio-asn1-entrezgene-perl
Package version 1.720
Package release 2
Package architecture all
Package type deb
Category devel::lang:perl devel::library field::biology field::biology:bioinformatics implemented-in::perl interface::commandline perl role::program works-with-format::plaintext
Homepage https://metacpan.org/release/Bio-ASN1-EntrezGene
License -
Maintainer Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Download size 37.83 KB
Installed size 103.00 KB
Bio::ASN1::EntrezGene and Bio::ASN1::Sequence are regular expression-based
parsers for NCBI Entrez Gene genome databases
(<http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene>).
They parse ASN.1-formatted Entrez Gene records and NCBI sequences,
returning data structures that contain all data items from the gene records
or the sequence records.
The parser will report error & line number if input data does not conform to
the NCBI Entrez Gene genome or NCBI Sequence annotation file format.
Bio::ASN1::Sequence is basically a modified version of the high-performance
Bio::ASN1::EntrezGene parser. However this standalone module exists since it
is more efficient to keep Sequence-specific code out of EntrezGene.pm.

Alternatives

Package Version Architecture Repository
libbio-asn1-entrezgene-perl_1.720-2_all.deb 1.720 all Debian Main
libbio-asn1-entrezgene-perl - - -

Requires

Name Value
libbio-perl-perl -
perl -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbio-asn1-entrezgene-perl_1.720-2_all.deb
Source Package libbio-asn1-entrezgene-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-asn1-entrezgene-perl deb package:
    # sudo apt-get install libbio-asn1-entrezgene-perl

Files

Path
/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.Debian.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/copyright
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/indexer_test.pl
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_entrez_gene_example.pl.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_sequence_example.pl
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/regex_parser_test.pl
/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm.gz
/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm.gz
/usr/share/man/man3/Bio::ASN1::Sequence.3pm.gz
/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm.gz
/usr/share/perl5/Bio/ASN1/EntrezGene.pm
/usr/share/perl5/Bio/ASN1/Sequence.pm
/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm

Changelog

2018-07-08 - gregor herrmann <gregoa@debian.org>
libbio-asn1-entrezgene-perl (1.720-2) unstable; urgency=medium
[ Salvatore Bonaccorso ]
* Update Vcs-* headers for switch to salsa.debian.org
[ gregor herrmann ]
* Add patch to fix regexp warnings in perl 5.28.
Thanks to Niko Tyni for the bug report. (Closes: #903294)
* Add a spelling patch.
* Update years of packaging copyright.
* Declare compliance with Debian Policy 4.1.5.
* Bump debhelper compatibility level to 10.
2016-10-09 - Florian Schlichting <fsfs@debian.org>
libbio-asn1-entrezgene-perl (1.720-1) unstable; urgency=medium
[ gregor herrmann ]
* Strip trailing slash from metacpan URLs.
[ Salvatore Bonaccorso ]
* Update Vcs-Browser URL to cgit web frontend
* debian/control: Use HTTPS transport protocol for Vcs-Git URI
[ gregor herrmann ]
* debian/copyright: change Copyright-Format 1.0 URL to HTTPS.
[ Florian Schlichting ]
* New upstream version 1.720
* Email change: Florian Schlichting -> fsfs@debian.org
* Add upstream metadata
* Bump dh compat to level 9
* Mark package autopkgtest-able
* Declare compliance with Debian Policy 3.9.8
* Add libbio-perl-perl as runtime dependency
2013-09-17 - gregor herrmann <gregoa@debian.org>
libbio-asn1-entrezgene-perl (1.700-1) unstable; urgency=low
[ Salvatore Bonaccorso ]
* Change Vcs-Git to canonical URI (git://anonscm.debian.org)
* Change search.cpan.org based URIs to metacpan.org based URIs
[ Axel Beckert ]
* debian/copyright: migrate pre-1.0 format to 1.0 using "cme fix dpkg-
copyright"
[ gregor herrmann ]
* New upstream release.
* Drop spelling patch, applied upstream.
* Update years of upstream and packaging copyright.
* Declare compliance with Debian Policy 3.9.4.
2012-01-12 - Florian Schlichting <fschlich@zedat.fu-berlin.de>
libbio-asn1-entrezgene-perl (1.100-1) unstable; urgency=low
[ Florian Schlichting ]
* Imported Upstream version 1.100.
* Bumped debhelper compatibility to 8, switched to short d/rules.
* Set source format to "3.0 (quilt)".
* Refreshed debian/copyright.
* Bumped Standards-Version to 3.9.2 (no change).
* Added myself to Uploaders.
* Added fix-spelling-error.patch.
[ Nathan Handler ]
* debian/watch: Update to ignore development releases.
[ Salvatore Bonaccorso ]
* debian/control: Changed: Replace versioned (build-)dependency on
perl (>= 5.6.0-{12,16}) with an unversioned dependency on perl (as
permitted by Debian Policy 3.8.3).
[ Ansgar Burchardt ]
* debian/control: Convert Vcs-* fields to Git.
[ gregor herrmann ]
* debian/watch: add uversionmangles to deal with version suffix and
2-digit minor versions.
2009-01-07 - gregor herrmann <gregoa@debian.org>
libbio-asn1-entrezgene-perl (1.091-2) unstable; urgency=low
[ David Paleino ]
* Removed myself from Uploaders (Closes: #509506)
[ gregor herrmann ]
* debian/control:
- added: Vcs-Svn field (source stanza); Vcs-Browser
field (source stanza); Homepage field (source stanza). Removed:
Homepage pseudo-field (Description); XS-Vcs-Svn fields.
(source stanza)
- added: ${misc:Depends} to Depends: field
- set Standards-Version to 3.8.0 (no changes)
- add /me to Uploaders
* debian/watch: use dist-based URL.
* Set debhelper compatibility level to 7; adapt
debian/{control,compat,rules}.
* debian/copyright: switch to new format.
2007-09-13 - David Paleino <d.paleino@gmail.com>
libbio-asn1-entrezgene-perl (1.091-1) unstable; urgency=low
* Initial release (Closes: #442135)

See Also

Package Description
libbio-chado-schema-perl_0.20000-2_all.deb DBIx::Class layer for the Chado database schema
libbio-coordinate-perl_1.7.1-3_all.deb BioPerl modules for working with biological coordinates
libbio-das-lite-perl_2.11-7_all.deb implementation of the BioDas protocol
libbio-eutilities-perl_1.75-4_all.deb BioPerl interface to the Entrez Programming Utilities (E-utilities)
libbio-graphics-perl_2.40-3_all.deb Generate GD images of Bio::Seq objects
libbio-mage-perl_20030502.3-5_all.deb Container module for classes in the MAGE package: MAGE
libbio-mage-utils-perl_20030502.0-4_all.deb Extra modules for classes in the MAGE package: MAGE
libbio-perl-perl_1.7.2-3_all.deb BioPerl core perl modules
libbio-perl-run-perl_1.7.2-4_all.deb BioPerl wrappers: modules
libbio-primerdesigner-perl_0.07-6_all.deb Perl module to design PCR primers using primer3 and epcr
libbio-samtools-perl_1.43-2_i386.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-4_i386.deb Perl extension for reading and writing SCF sequence files
libbio-tools-phylo-paml-perl_1.7.3-2_all.deb Bioperl interface to the PAML suite
libbio-tools-run-alignment-clustalw-perl_1.7.4-1_all.deb Bioperl interface to Clustal W
libbio-tools-run-alignment-tcoffee-perl_1.7.4-1_all.deb Bioperl interface to T-Coffee
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