iqtree_1.6.9+dfsg-1_i386.deb


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Description

iqtree - efficient phylogenetic software by maximum likelihood

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename iqtree_1.6.9+dfsg-1_i386.deb
Package name iqtree
Package version 1.6.9+dfsg
Package release 1
Package architecture i386
Package type deb
Category science
Homepage http://www.cibiv.at/software/iqtree/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 2.50 MB
Installed size 14.23 MB
IQ-TREE is a very efficient maximum likelihood phylogenetic software
with following key features among others:
* A novel fast and effective stochastic algorithm to estimate maximum
likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
of likelihood while requiring similar amount of computing time (see
Nguyen et al., 2015)
* An ultrafast bootstrap approximation to assess branch supports (see
Minh et al., 2013).
* A wide range of substitution models for binary, DNA, protein, codon,
and morphological alignments.
* Ultrafast model selection for all data types, 10 to 100 times faster
than jModelTest and ProtTest.
* Finding best partition scheme like PartitionFinder.
* Partitioned models with mixed data types for phylogenomic (multi-
gene) alignments, allowing for separate, proportional, or joint
branch lengths among genes.
* Supporting the phylogenetic likelihod library (PLL) (see Flouri et
al., 2014)

Alternatives

Package Version Architecture Repository
iqtree_1.6.9+dfsg-1_amd64.deb 1.6.9+dfsg amd64 Debian Main
iqtree - - -

Requires

Name Value
libc6 >= 2.7
libgcc1 >= 1:4.2
libgomp1 >= 4.9
libopenmpi3 -
libstdc++6 >= 5.2
zlib1g >= 1:1.1.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package iqtree_1.6.9+dfsg-1_i386.deb
Source Package iqtree

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install iqtree deb package:
    # sudo apt-get install iqtree

Files

Path
/usr/bin/iqtree
/usr/bin/iqtree-mpi
/usr/bin/iqtree-omp
/usr/share/doc/iqtree/README.test
/usr/share/doc/iqtree/changelog.Debian.gz
/usr/share/doc/iqtree/copyright
/usr/share/doc/iqtree/run-unit-test
/usr/share/doc/iqtree/examples/example.cf.gz
/usr/share/doc/iqtree/examples/example.nex
/usr/share/doc/iqtree/examples/example.phy.gz
/usr/share/doc/iqtree/examples/models.nex.gz
/usr/share/man/man1/iqtree-mpi.1.gz
/usr/share/man/man1/iqtree-omp.1.gz
/usr/share/man/man1/iqtree.1.gz

Changelog

2019-01-02 - Andreas Tille <tille@debian.org>
iqtree (1.6.9+dfsg-1) unstable; urgency=medium
* New upstream version
2018-12-13 - Andreas Tille <tille@debian.org>
iqtree (1.6.8+dfsg-1) unstable; urgency=medium
* New upstream version
* Autopkgtest: Upstream now requires -redo option to allow overriding
existing output data
2018-09-26 - Andreas Tille <tille@debian.org>
iqtree (1.6.7.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.2.1
* Delete RPATH from /usr/bin/iqtree-omp
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test
2018-05-22 - Andreas Tille <tille@debian.org>
iqtree (1.6.5+dfsg-1) unstable; urgency=medium
* New upstream version
* Delete RPATH from /usr/bin/iqtree-mpi
2018-04-26 - Andreas Tille <tille@debian.org>
iqtree (1.6.3+dfsg-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2018-02-16 - Andreas Tille <tille@debian.org>
iqtree (1.6.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
* Rename build.omp/iqtree to build.omp/iqtree-omp to be consistent with
previous builds
* Do not install example.cf in /usr
* Do not parse d/changelog
* Update d/copyright
* Use example script as autopkgtest
2017-06-19 - Andreas Tille <tille@debian.org>
iqtree (1.5.5+dfsg-1) unstable; urgency=medium
* New upstream version
2017-02-11 - Andreas Tille <tille@debian.org>
iqtree (1.5.3+dfsg-2) unstable; urgency=medium
[ Roger Shimizu ]
* debian/rules:
- Run dh_auto_test only if CPUs >= 2 (Closes: #854500).
[ Andreas Tille ]
* Implement remarks given by upstream
(https://github.com/Cibiv/IQ-TREE/issues/17)
2017-01-19 - Andreas Tille <tille@debian.org>
iqtree (1.5.3+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 10
* d/watch: version=4
2016-12-04 - Kevin Murray <kdmfoss@gmail.com>
iqtree (1.5.2+dfsg-1) unstable; urgency=medium
* New upstream version 1.5.2+dfsg (Closes: #846958)
* Enable build of MPI-parallelised executable

See Also

Package Description
ir-keytable_1.16.3-3_i386.deb Alter keymaps of Remote Controller devices
ir.lv2_1.3.3~dfsg0-1_i386.deb LV2 IR reverb
iraf-dev_2.16.1+2018.11.01-2_i386.deb Image Reduction and Analysis Facility (development files)
iraf-fitsutil_2018.07.06-3+b1_i386.deb FITS utilities for IRAF
iraf-mscred_5.05+2018.07.09-1+b1_i386.deb CCD mosaic reduction package for IRAF
iraf-noao-dev_2.16.1+2018.11.01-2_i386.deb IRAF NOAO data reduction package (development files)
iraf-noao_2.16.1+2018.11.01-2_i386.deb IRAF NOAO data reduction package
iraf-rvsao_2.8.3-1+b1_i386.deb IRAF package to obtain radial velocities from spectra
iraf-sptable_1.0~pre20180612-1+b1_i386.deb IRAF package for Tabular Spectra
iraf-wcstools_3.9.5-3_all.deb Handle the WCS of a FITS image (IRAF package)
iraf_2.16.1+2018.11.01-2_i386.deb Image Reduction and Analysis Facility
ircd-hybrid_8.2.24+dfsg.1-1_i386.deb high-performance secure IRC server
ircd-irc2_2.11.2p3~dfsg-5_i386.deb The original IRC server daemon
ircd-ircu_2.10.12.10.dfsg1-3_i386.deb Undernet IRC Server daemon
ircii_20190117-1_i386.deb Internet Relay Chat client
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