concavity_0.1+dfsg.1-4_i386.deb


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Description

concavity - predictor of protein ligand binding sites from structure and conservation

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename concavity_0.1+dfsg.1-4_i386.deb
Package name concavity
Package version 0.1+dfsg.1
Package release 4
Package architecture i386
Package type deb
Category science
Homepage http://compbio.cs.princeton.edu/concavity/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 302.59 KB
Installed size 629.00 KB
ConCavity predicts protein ligand binding sites by combining evolutionary
sequence conservation and 3D structure.
ConCavity takes as input a PDB format protein structure and optionally
files that characterize the evolutionary sequence conservation of the chains
in the structure file.
The following result files are produced by default:
* Residue ligand binding predictions for each chain (*.scores).
* Residue ligand binding predictions in a PDB format file (residue
scores placed in the temp. factor field, *_residue.pdb).
* Pocket prediction locations in a DX format file (*.dx).
* PyMOL script to visualize the predictions (*.pml).

Alternatives

Package Version Architecture Repository
concavity_0.1+dfsg.1-4_amd64.deb 0.1+dfsg.1 amd64 Debian Main
concavity - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5

Download

Type URL
Mirror ftp.br.debian.org
Binary Package concavity_0.1+dfsg.1-4_i386.deb
Source Package concavity

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install concavity deb package:
    # sudo apt-get install concavity

Files

Path
/usr/bin/concavity
/usr/share/doc/concavity/README.test
/usr/share/doc/concavity/README.txt.gz
/usr/share/doc/concavity/changelog.Debian.gz
/usr/share/doc/concavity/changelog.gz
/usr/share/doc/concavity/copyright
/usr/share/doc/concavity/installation-test
/usr/share/doc/concavity/examples/1G6C.pdb.gz
/usr/share/doc/concavity/examples/conservation_data/1G6C_A_jsd.scores.gz
/usr/share/doc/concavity/examples/conservation_data/1G6C_B_jsd.scores.gz
/usr/share/doc/concavity/examples/conservation_data/1G6C_C_jsd.scores.gz
/usr/share/doc/concavity/examples/conservation_data/1G6C_D_jsd.scores.gz
/usr/share/man/man1/concavity.1.gz

Changelog

2018-12-08 - Andreas Tille <tille@debian.org>
concavity (0.1+dfsg.1-4) unstable; urgency=medium
[ Jelmer Vernooń≥ ]
* Use secure copyright file specification URI.
[ Helmut Grohne ]
* Make sure C++ compiler is used for C++ sources
Closes: #904145
[ Andreas Tille ]
* Standards-Version: 4.2.1
2018-07-13 - Andreas Tille <tille@debian.org>
concavity (0.1+dfsg.1-2) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added ref to OMICtools
[ Andreas Tille ]
* Remove unneeded Testsuite: autopkgtest
* Fake watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Do not parse d/changelog
2016-06-07 - Tatiana Malygina <merlettaia@gmail.com>
concavity (0.1+dfsg.1-1) unstable; urgency=medium
* Team upload.
* Remove ply.* files. Closes: #822382
* added README.test, mention it and example test in docs
2016-04-18 - Andreas Tille <tille@debian.org>
concavity (0.1+dfsg-2) UNRELEASED; urgency=medium
[ Tatiana Malygina ]
* Add autopkgtest
* Add output existence check for autopkgtest
[ Andreas Tille ]
* Remove citation information from long description
* cme fix dpkg-control
* Better hardening
2016-01-08 - Andreas Tille <tille@debian.org>
concavity (0.1+dfsg-1) unstable; urgency=low
[ Laszlo Kajan ]
* Removed dm upload allowed from d/control.
[ Andreas Tille ]
* add myself to Uploaders
* cme fix dpkg-control
* moved debian/upstream to debian/metadata/upstream
* use Files-Excluded to create upstream source
* moved to git
* debhelper 9
* Priority: optional
* remove debug package since these are generated automatically
* DEP5 fixes
* cleanup rules
2012-10-10 - Laszlo Kajan <lkajan@rostlab.org>
concavity (0.1-2) unstable; urgency=low
* Added cmd line argument for limiting cavity threshold search steps.
* Fixed d/control description.
* Use a wildcard to account for all architectures (Closes: #693017).
2012-09-28 - Laszlo Kajan <lkajan@rostlab.org>
concavity (0.1-1) unstable; urgency=low
* Initial release (Closes: #689020)

See Also

Package Description
concordance-common_1.3-1_all.deb Harmony remote configuration tool - common files
concordance_1.3-1_i386.deb configuration tool for Harmony remotes
confclerk_0.6.4-1_i386.deb offline conference schedule application
confget_2.2.0-4_i386.deb read variables from INI-style configuration files
config-package-dev_5.5_all.deb Debhelper (and CDBS) modules for building configuration packages
configure-debian_1.0.3_all.deb central configuration program for packages using debconf
congress-common_8.0.0+dfsg1-1_all.deb OpenStack Policy as a Service - common files
congress-server_8.0.0+dfsg1-1_all.deb OpenStack Policy as a Service - API server
congruity_20-1_all.deb graphical utility to configure Logitech Harmony remotes
conjugar_0.8.3-5_i386.deb text only program to conjugate Brazilian verbs
conky-all_1.10.8-1+b1_i386.deb highly configurable system monitor (all features enabled)
conky-cli_1.10.8-1+b1_i386.deb highly configurable system monitor (basic version)
conky-std_1.10.8-1+b1_i386.deb highly configurable system monitor (default version)
conky_1.10.8-1_all.deb highly configurable system monitor (transitional package)
conman_0.2.7-1+b1_i386.deb serial console management program
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