codonw_1.4.4-4_i386.deb


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Description

codonw - Correspondence Analysis of Codon Usage

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename codonw_1.4.4-4_i386.deb
Package name codonw
Package version 1.4.4
Package release 4
Package architecture i386
Package type deb
Category biology::nucleic-acids field::biology field::biology:bioinformatics implemented-in::c interface::commandline interface::text-mode role::program science scope::utility use::analysing
Homepage http://codonw.sourceforge.net
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 92.87 KB
Installed size 262.00 KB
CodonW is a package for codon usage analysis. It was designed to simplify
Multivariate Analysis (MVA) of codon usage. The MVA method employed in
CodonW is correspondence analysis (COA) (the most popular MVA method for
codon usage analysis). CodonW can generate a COA for codon usage, relative
synonymous codon usage or amino acid usage. Additional analyses of codon
usage include investigation of optimal codons, codon and dinucleotide bias,
and/or base composition. CodonW analyses sequences encoded by genetic codes
other than the universal code.

Alternatives

Package Version Architecture Repository
codonw_1.4.4-4_amd64.deb 1.4.4 amd64 Debian Main
codonw - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Mirror ftp.br.debian.org
Binary Package codonw_1.4.4-4_i386.deb
Source Package codonw

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install codonw deb package:
    # sudo apt-get install codonw

Files

Path
/usr/bin/codonw
/usr/bin/codonw-aau
/usr/bin/codonw-base3s
/usr/bin/codonw-bases
/usr/bin/codonw-cai
/usr/bin/codonw-cbi
/usr/bin/codonw-cu
/usr/bin/codonw-cutab
/usr/bin/codonw-cutot
/usr/bin/codonw-dinuc
/usr/bin/codonw-enc
/usr/bin/codonw-fop
/usr/bin/codonw-gc
/usr/bin/codonw-gc3s
/usr/bin/codonw-raau
/usr/bin/codonw-reader
/usr/bin/codonw-rscu
/usr/bin/codonw-tidy
/usr/bin/codonw-transl
/usr/share/codonw/codonW.hlp
/usr/share/doc-base/codonw
/usr/share/doc-base/codonw-doc
/usr/share/doc/codonw/README_coa.txt.gz
/usr/share/doc/codonw/README_indices.txt.gz
/usr/share/doc/codonw/READ_coa.txt.gz
/usr/share/doc/codonw/Readme.txt.gz
/usr/share/doc/codonw/Recoding.txt
/usr/share/doc/codonw/Tutorial.txt.gz
/usr/share/doc/codonw/changelog.Debian.gz
/usr/share/doc/codonw/copyright
/usr/share/doc/codonw/indices.txt.gz
/usr/share/lintian/overrides/codonw
/usr/share/man/man1/codonw-aau.1.gz
/usr/share/man/man1/codonw-base3s.1.gz
/usr/share/man/man1/codonw-bases.1.gz
/usr/share/man/man1/codonw-cai.1.gz
/usr/share/man/man1/codonw-cbi.1.gz
/usr/share/man/man1/codonw-cu.1.gz
/usr/share/man/man1/codonw-cutab.1.gz
/usr/share/man/man1/codonw-cutot.1.gz
/usr/share/man/man1/codonw-dinuc.1.gz
/usr/share/man/man1/codonw-enc.1.gz
/usr/share/man/man1/codonw-fop.1.gz
/usr/share/man/man1/codonw-gc.1.gz
/usr/share/man/man1/codonw-gc3s.1.gz
/usr/share/man/man1/codonw-raau.1.gz
/usr/share/man/man1/codonw-reader.1.gz
/usr/share/man/man1/codonw-rscu.1.gz
/usr/share/man/man1/codonw-tidy.1.gz
/usr/share/man/man1/codonw-transl.1.gz
/usr/share/man/man1/codonw.1.gz

Changelog

2018-07-04 - Sascha Steinbiss <satta@debian.org>
codonw (1.4.4-4) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added ref to OMICtools
- Added associated paper
* Corrected upstream name to codonW
[ Dylan Aïssi ]
* Fix OMICS ID
[ Sascha Steinbiss ]
* Use secure d/copyright format link.
* Use debhelper 11.
* Bump Standards-Version.
* Remove unnecessary patch file.
* Update Uploader email address.
* Update Vcs-* fields with Salsa addresses.
* Fix whitespace issue in changelog.
* Use recent Lintian override names.
2016-02-26 - Sascha Steinbiss <sascha@steinbiss.name>
codonw (1.4.4-3) unstable; urgency=low
* Fix typo in d/copyright
* Add EDAM annotation
* Bump Standards-Version.
* Use secure Vcs-Git.
* Add Lintian overrides for pedantic issues.
* Fix spelling.
2015-12-07 - Sascha Steinbiss <sascha@steinbiss.name>
codonw (1.4.4-2) unstable; urgency=medium
* Remove nondeterminism
- menu.c: Do not print compilation date and time
2015-11-20 - Sascha Steinbiss <sascha@steinbiss.name>
codonw (1.4.4-1) unstable; urgency=low
* Initial release (Closes: #805693)

See Also

Package Description
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coinor-cbc_2.9.9+repack1-1_i386.deb Coin-or branch-and-cut mixed integer programming solver
coinor-clp_1.16.11+repack1-1_i386.deb Coin-or linear programming solver
coinor-csdp-doc_6.1.1-1_all.deb A software package for semidefinite programming
coinor-csdp_6.1.1-1+b2_i386.deb A software package for semidefinite programming
coinor-libcbc-dev_2.9.9+repack1-1_i386.deb Coin-or branch-and-cut mixed integer programming solver (developer files)
coinor-libcbc-doc_2.9.9+repack1-1_all.deb Coin-or branch-and-cut mixed integer programming solver (documentation)
coinor-libcbc3_2.9.9+repack1-1_i386.deb Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl-dev_0.59.10+repack1-1_i386.deb COIN-OR Cut Generation Library (developer files)
coinor-libcgl-doc_0.59.10+repack1-1_all.deb COIN-OR Cut Generation Library (documentation)
coinor-libcgl1_0.59.10+repack1-1_i386.deb COIN-OR Cut Generation Library
coinor-libclp-dev_1.16.11+repack1-1_i386.deb Coin-or linear programming solver (developer files)
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