alien-hunter_1.7-7_all.deb


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Description

alien-hunter - Interpolated Variable Order Motifs to identify horizontally acquired DNA

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename alien-hunter_1.7-7_all.deb
Package name alien-hunter
Package version 1.7
Package release 7
Package architecture all
Package type deb
Category field::biology field::biology:structural implemented-in::java implemented-in::perl interface::commandline role::program science scope::utility use::analysing
Homepage http://www.sanger.ac.uk/science/tools/alien-hunter
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 28.07 KB
Installed size 91.00 KB
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger.ac.uk/Software/Artemis/.

Alternatives

Package Version Architecture Repository
alien-hunter_1.7-7_all.deb 1.7 all Debian Main
alien-hunter - - -

Requires

Name Value
libbiojava-java -
libbytecode-java -
libcommons-cli-java -
libcommons-collections3-java -
libcommons-dbcp-java -
libcommons-pool-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package alien-hunter_1.7-7_all.deb
Source Package alien-hunter

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install alien-hunter deb package:
    # sudo apt-get install alien-hunter

Files

Path
/usr/bin/alien_hunter
/usr/share/alien_hunter/ChangepointLeft$1.class
/usr/share/alien_hunter/ChangepointLeft.class
/usr/share/alien_hunter/ChangepointRight$1.class
/usr/share/alien_hunter/ChangepointRight.class
/usr/share/alien_hunter/alien_hunter.pl
/usr/share/doc/alien-hunter/README.test
/usr/share/doc/alien-hunter/changelog.Debian.gz
/usr/share/doc/alien-hunter/copyright
/usr/share/doc/alien-hunter/run-unit-test
/usr/share/doc/alien-hunter/examples/demoSeq.dna.gz
/usr/share/man/man1/alien_hunter.1.gz
/usr/share/perl5/changepointCaller.pm
/usr/share/perl5/PAI_scripts/CutOff.pm
/usr/share/perl5/PAI_scripts/MotifMaker.pm
/usr/share/perl5/PAI_scripts/changePoint.pm
/usr/share/perl5/PAI_scripts/help.pm
/usr/share/perl5/PAI_scripts/overlap.pm
/usr/share/perl5/PAI_scripts/rrna.pm

Changelog

2018-10-19 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-7) unstable; urgency=medium
[ Steffen Moeller ]
* d/u/metadata
- Added RRIDs
- yamllint clean
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
2017-11-13 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-6) unstable; urgency=medium
* Moved packaging from SVN to Git
* Standards-Version: 4.1.1
* d/rules: do not parse d/changelog
2016-12-16 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-5) unstable; urgency=medium
* Add autopkgtest
2016-12-05 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-4) unstable; urgency=medium
* Fix homepage
* Fake watch file
* cme fix dpkg-control
* debhelper 10
* DEP5
2014-04-11 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-3) unstable; urgency=medium
* debian/upstream moved to debian/upstream/metadata
* cme fix dpkg-control
* replace libcommons-collections-java by libcommons-collections3-java
Closes: #744209
2013-09-12 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-2) unstable; urgency=low
[ Charles Plessy ]
* Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
* Updated homepage (debian/control).
[ Andreas Tille ]
* debian/upstream: Removed duplicated information, reordering
* debian/copyright: DEP5
* debian/source/format: 3.0 (quilt)
* debian/control:
- cme fix dpkg-control
- debhelper 9
- anonscm in Vcs fields
- drop quilt from Build-Depends
2009-10-14 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-1) unstable; urgency=low
* Initial release (Closes: #550954)

See Also

Package Description
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all-knowing-dns_1.7-2_all.deb tiny DNS server for IPv6 Reverse DNS
allegro4-doc_4.4.2-13_all.deb documentation for the Allegro library
allegro5-doc_5.2.4.0-3_all.deb documentation for the Allegro 5 library
alliance_5.1.1-3_i386.deb VLSI CAD Tools
alljoyn-daemon-1504_15.04b+dfsg.1-3_i386.deb AllJoyn daemon service
alljoyn-daemon-1509_15.09a+dfsg.1-3_i386.deb AllJoyn daemon service
alljoyn-daemon-1604_16.04a+dfsg.1-3_i386.deb AllJoyn daemon service
alljoyn-gateway-1504_15.04~git20160606-4_i386.deb AllJoyn gateway agent for 1504
alljoyn-services-1504_15.04-8_i386.deb AllJoyn base services for 1504
alljoyn-services-1509_15.09-6_i386.deb AllJoyn base services for 1509
alljoyn-services-1604_16.04-5_i386.deb AllJoyn base services for 1604
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