uc-echo_1.12-11_amd64.deb


Advertisement

Description

uc-echo - error correction algorithm designed for short-reads from NGS

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename uc-echo_1.12-11_amd64.deb
Package name uc-echo
Package version 1.12
Package release 11
Package architecture amd64
Package type deb
Category science
Homepage http://uc-echo.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 75.25 KB
Installed size 354.00 KB
ECHO is an error correction algorithm designed for short-reads
from next-generation sequencing platforms such as Illumina's
Genome Analyzer II. The algorithm uses a Bayesian framework to
improve the quality of the reads in a given data set by employing
maximum a posteriori estimation.

Alternatives

Package Version Architecture Repository
uc-echo_1.12-11_i386.deb 1.12 i386 Debian Main
uc-echo - - -

Requires

Name Value
libc6 >= 2.27
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
python-scipy -
python:any >= 2.6.6-7~

Download

Type URL
Mirror ftp.br.debian.org
Binary Package uc-echo_1.12-11_amd64.deb
Source Package uc-echo

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install uc-echo deb package:
    # sudo apt-get install uc-echo

Files

Path
/usr/bin/uc-echo
/usr/lib/uc-echo/ErrorCorrection.py
/usr/lib/uc-echo/HashMerge
/usr/lib/uc-echo/NeighborJoin
/usr/lib/uc-echo/NeighborJoinParam
/usr/lib/uc-echo/NeighborMerge
/usr/lib/uc-echo/Voting
/usr/lib/uc-echo/hashing
/usr/share/doc/uc-echo/README.Debian
/usr/share/doc/uc-echo/changelog.Debian.gz
/usr/share/doc/uc-echo/changelog.gz
/usr/share/doc/uc-echo/copyright
/usr/share/lintian/overrides/uc-echo
/usr/share/man/man1/uc-echo.1.gz
/usr/share/python/runtime.d/uc-echo.rtupdate

Changelog

2019-05-21 - Helmut Grohne <helmut@subdivi.de>
uc-echo (1.12-11) unstable; urgency=medium
* Team upload.
[ Helmut Grohne ]
* Fix FTCBFS: Annotate Build-Depends. (Closes: #929330)
[ Andreas Tille ]
* Standards-Version: 4.3.0
2018-07-03 - Andreas Tille <tille@debian.org>
uc-echo (1.12-10) unstable; urgency=medium
[ Steffen Moeller and Jon Ison ]
* Introduced EDAM annotation
* debian/upstream/metadata: Added references to registries
[ Andreas Tille ]
* Update d/copyright
* Drop redundant get-orig-source target
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* hardening=+all
2015-05-15 - Navid Fehrenbacher <nf@q-leap.de>
uc-echo (1.12-9) unstable; urgency=medium
* Add dependency python-scipy
Closes: #785006
2014-12-08 - Andreas Tille <tille@debian.org>
uc-echo (1.12-8) unstable; urgency=medium
* Prevent option -m64 on arm64
Closes: #770041
* cme fix dpkg-control
* DEP5
2014-06-19 - Andreas Tille <tille@debian.org>
uc-echo (1.12-7) unstable; urgency=medium
* Add support with mips abi=n32, n64 (thanks for the patch to
Sphinx Jiang <yishanj13@gmail.com>)
Closes: #752070
2014-03-27 - Andreas Tille <tille@debian.org>
uc-echo (1.12-6) unstable; urgency=medium
* Fix Build on hppa (thanks for the patch to Helge Deller <deller@gmx.de>)
Closes: #742744
2014-03-21 - Andreas Tille <tille@debian.org>
uc-echo (1.12-5) unstable; urgency=medium
* debian/upstream -> debian/upstream/metadata
* Restore g++-multilib build-dependency on several 32-bit architectures.
(thanks for the patch to Colin Watson <cjwatson@ubuntu.com>)
Closes: #742285
2013-12-18 - Andreas Tille <tille@debian.org>
uc-echo (1.12-4) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream: title needs quoting since it contains a ": " string
* debian/control:
- cme fix dpkg-control
[ Nobuhiro Iwamatsu ]
* Add sh4 powerpcspe and m68k for don't need -m64.
* Use dpkg-architecture -qDEB_HOST_MULTIARCH instead of gcc -print-multiarch.
Closes: #728412
2013-10-30 - Thorsten Alteholz <debian@alteholz.de>
uc-echo (1.12-3) unstable; urgency=low
* debian/rules: more architectures don't need -m64
2013-10-29 - Thorsten Alteholz <debian@alteholz.de>
uc-echo (1.12-2) unstable; urgency=low
* debian/control: use g++-multilib only when available (Closes: #727657)
* debian/control: use canonical vcs-fields
* add patch to compile on mips/mipsel

See Also

Package Description
ucarp_1.5.2-2.2_amd64.deb user-space replacement to VRRP -- automatic IP fail-over
ucblogo_6.0+dfsg-2+b1_amd64.deb dialect of lisp using turtle graphics famous for teaching kids
ucf_3.0038+nmu1_all.deb Update Configuration File(s): preserve user changes to config files
uchardet_0.0.6-3_amd64.deb universal charset detection library - cli utility
uci2wb_4.0-1_amd64.deb protocol adapter between XBoard/CECP and UCI/USI/UCCI engines
ucimf-chewing_0.3-3_amd64.deb ucimf wrapper for Chewing input method
ucimf-openvanilla_2.10.11-4_amd64.deb openvanilla input method collection for ucimf
ucimf-sunpinyin_0.5-1_amd64.deb ucimf wrapper for Sunpinyin IM engine
ucimf_2.3.8-10_amd64.deb Unicode console input method framework
uclibc-source_1.0.31-1_all.deb Small C library implementation - source
ucommon-doc_7.0.0-16_all.deb lightweight C++ threading and sockets - documentation
ucommon-utils_7.0.0-16_amd64.deb lightweight C++ threading and sockets - utilities
ucpp_1.3.2-2+b1_amd64.deb embeddable, quick and light C preprocessor
ucrpf1host_0.0.20181108-1_all.deb host program for Panowin F1 3D printer
ucspi-proxy_0.99-1.1_amd64.deb Connection proxy for UCSPI tools
Advertisement
Advertisement