ruby-fix-trinity-output_1.0.0-2_all.deb


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Description

ruby-fix-trinity-output - Fix output fastq files from trinityrnaseq

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename ruby-fix-trinity-output_1.0.0-2_all.deb
Package name ruby-fix-trinity-output
Package version 1.0.0
Package release 2
Package architecture all
Package type deb
Category ruby
Homepage http://rubygems.org/gems/fix-trinity-output
License -
Maintainer Debian Ruby Extras Maintainers <pkg-ruby-extras-maintainers@lists.alioth.debian.org>
Download size 4.92 KB
Installed size 30.00 KB
trinityrnaseq outputs fastq files that have been 'corrected'
Unfortunately these files are no longer properly paired and therefore can't be
used in most aligners such as bowtie2 and snap-aligner. This script attempts
to fix that and produce 2 properly paired fastq files and a fastq file
containing single reads

Alternatives

Package Version Architecture Repository
ruby-fix-trinity-output_1.0.0-2_all.deb 1.0.0 all Debian Main
ruby-fix-trinity-output - - -

Requires

Name Value
ruby -
ruby-interpreter -
ruby-trollop >= 2.0

Download

Type URL
Mirror ftp.br.debian.org
Binary Package ruby-fix-trinity-output_1.0.0-2_all.deb
Source Package ruby-fix-trinity-output

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ruby-fix-trinity-output deb package:
    # sudo apt-get install ruby-fix-trinity-output

Files

Path
/usr/bin/fix-trinity-output
/usr/lib/ruby/vendor_ruby/fix-trinity-output.rb
/usr/lib/ruby/vendor_ruby/fix-trinity-output/fix-trinity-output.rb
/usr/share/doc/ruby-fix-trinity-output/README.md
/usr/share/doc/ruby-fix-trinity-output/changelog.Debian.gz
/usr/share/doc/ruby-fix-trinity-output/copyright
/usr/share/man/man1/fix-trinity-output.1.gz
/usr/share/rubygems-integration/all/specifications/fix-trinity-output-1.0.0.gemspec

Changelog

2019-02-14 - Michael R. Crusoe <michael.crusoe@gmail.com>
ruby-fix-trinity-output (1.0.0-2) unstable; urgency=medium
* Update my email address
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0; no changes needed
* Secure URI in copyright format
* Do not parse d/changelog
* Move debian/watch to gemwatch.debian.net
2015-09-19 - Michael R. Crusoe <crusoe@ucdavis.edu>
ruby-fix-trinity-output (1.0.0-1) unstable; urgency=medium
* Initial release (Closes: #800489)

See Also

Package Description
ruby-fixwhich_1.0.2-2_all.deb ruby module that emulates the 'which' program
ruby-flexmock_2.0.4-1_all.deb simple and flexible mock objects for testing
ruby-flipper_0.13.0-3_all.deb Feature flipper for ANYTHING
ruby-flot-rails_0.0.7-1_all.deb jQuery Flot for Rails Asset pipeline
ruby-flowdock_0.7.1-1_all.deb Ruby library for using Flowdock's API
ruby-fog-aliyun_0.3.2-2_all.deb Fog provider for Aliyun Web Services
ruby-fog-aws_3.3.0-5_all.deb module for the 'fog' gem to support Amazon Web Services
ruby-fog-core_2.1.0-3_all.deb shared classes and tests for fog providers and services
ruby-fog-google_1.8.2-1_all.deb module for the 'fog' library to support Google cloud services
ruby-fog-json_1.2.0-1_all.deb JSON parsing for fog providers
ruby-fog-libvirt_0.6.0-1_all.deb Module for the 'fog' gem to support libvirt
ruby-fog-local_0.6.0-1_all.deb Module for the 'fog' gem to support local filesystem storage
ruby-fog-openstack_1.0.8-2_all.deb module for 'fog' library to support OpenStack instances
ruby-fog-profitbricks_0.0.1-2_all.deb library to use ProfitBricks cloud in applications
ruby-fog-rackspace_0.1.6-2_all.deb Rackspace support for Fog
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