r-bioc-cner_1.18.1+dfsg-1_amd64.deb


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Description

r-bioc-cner - CNE Detection and Visualization

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package name r-bioc-cner
Package version 1.18.1+dfsg
Package release 1
Package architecture amd64
Package type deb
Installed size 17.44 KB
Download size 7.90 MB
Official Mirror ftp.br.debian.org
Large-scale identification and advanced visualization
of sets of conserved noncoding elements.

Alternatives

Package Version Architecture Repository
r-bioc-cner_1.18.1+dfsg-1_i386.deb 1.18.1+dfsg i386 Debian Main
r-bioc-cner - - -

Requires

Name Value
libc6 >= 2.14
r-api 3.5
r-base-core >= 3.5.1-1
r-bioc biocgenerics
r-bioc-annotate >= 1.50.0
r-bioc-biostrings >= 2.33.4
r-bioc-genomeinfodb >= 1.1.3
r-bioc-genomicalignments >= 1.1.9
r-bioc-genomicranges >= 1.23.16
r-bioc-go.db >= 3.3.0
r-bioc-iranges >= 2.5.27
r-bioc-keggrest >= 1.14.0
r-bioc-rtracklayer >= 1.25.5
r-bioc-s4vectors >= 0.13.13
r-bioc-xvector >= 0.5.4
r-cran-dbi >= 0.7
r-cran-ggplot2 >= 2.1.0
r-cran-powerlaw >= 0.60.3
r-cran-r.utils >= 2.3.0
r-cran-readr >= 0.2.2
r-cran-reshape2 >= 1.4.1
r-cran-rsqlite >= 0.11.4
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package r-bioc-cner_1.18.1+dfsg-1_amd64.deb
Source Package r-bioc-cner

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install r-bioc-cner deb package:
    # sudo apt-get install r-bioc-cner

Files

Path
/usr/lib/R/site-library/CNEr/DESCRIPTION
/usr/lib/R/site-library/CNEr/INDEX
/usr/lib/R/site-library/CNEr/NAMESPACE
/usr/lib/R/site-library/CNEr/NEWS
/usr/lib/R/site-library/CNEr/Meta/Rd.rds
/usr/lib/R/site-library/CNEr/Meta/data.rds
/usr/lib/R/site-library/CNEr/Meta/features.rds
/usr/lib/R/site-library/CNEr/Meta/hsearch.rds
/usr/lib/R/site-library/CNEr/Meta/links.rds
/usr/lib/R/site-library/CNEr/Meta/nsInfo.rds
/usr/lib/R/site-library/CNEr/Meta/package.rds
/usr/lib/R/site-library/CNEr/Meta/vignette.rds
/usr/lib/R/site-library/CNEr/R/CNEr
/usr/lib/R/site-library/CNEr/R/CNEr.rdb
/usr/lib/R/site-library/CNEr/R/CNEr.rdx
/usr/lib/R/site-library/CNEr/data/CNEDanRer10Hg38.rda
/usr/lib/R/site-library/CNEr/data/CNEHg38DanRer10.rda
/usr/lib/R/site-library/CNEr/data/axisTrack.rda
/usr/lib/R/site-library/CNEr/data/cneFinalListDanRer10Hg38.rda
/usr/lib/R/site-library/CNEr/data/cpgIslands.rda
/usr/lib/R/site-library/CNEr/data/grangesPairsForDotplot.rda
/usr/lib/R/site-library/CNEr/data/refGenes.rda
/usr/lib/R/site-library/CNEr/doc/CNEr.R
/usr/lib/R/site-library/CNEr/doc/CNEr.Rmd
/usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.R
/usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.Rmd
/usr/lib/R/site-library/CNEr/doc/index.html
/usr/lib/R/site-library/CNEr/extdata/chr4.hg19.galGal3.net.axt.gz
/usr/lib/R/site-library/CNEr/extdata/cne2wBf_AstMex102_danRer10_48_50
/usr/lib/R/site-library/CNEr/extdata/cne2wBf_cteIde1_danRer10_100_100
/usr/lib/R/site-library/CNEr/extdata/cne2wBf_cypCar1_danRer10_100_100
/usr/lib/R/site-library/CNEr/extdata/cne2wBf_danRer10_hg38_45_50
/usr/lib/R/site-library/CNEr/extdata/danRer10.hg38.net.axt
/usr/lib/R/site-library/CNEr/extdata/danRer10CNE.sqlite
/usr/lib/R/site-library/CNEr/extdata/filter_regions.danRer10.bed
/usr/lib/R/site-library/CNEr/extdata/filter_regions.hg38.bed
/usr/lib/R/site-library/CNEr/extdata/hg38.danRer10.net.axt
/usr/lib/R/site-library/CNEr/extdata/rmsk.fa
/usr/lib/R/site-library/CNEr/help/AnIndex
/usr/lib/R/site-library/CNEr/help/CNEr.rdb
/usr/lib/R/site-library/CNEr/help/CNEr.rdx
/usr/lib/R/site-library/CNEr/help/aliases.rds
/usr/lib/R/site-library/CNEr/help/paths.rds
/usr/lib/R/site-library/CNEr/html/00Index.html
/usr/lib/R/site-library/CNEr/html/R.css
/usr/lib/R/site-library/CNEr/libs/CNEr.so
/usr/lib/R/site-library/CNEr/obsolete/CNEr.Rnw
/usr/lib/R/site-library/CNEr/obsolete/alignment.c
/usr/lib/R/site-library/CNEr/obsolete/ceScan.r
/usr/lib/R/site-library/CNEr/obsolete/ceScanR.r
/usr/lib/R/site-library/CNEr/obsolete/class.r
/usr/lib/R/site-library/CNEr/obsolete/src/ceScan.c
/usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch1.c
/usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch2.c
/usr/lib/R/site-library/CNEr/obsolete/src/compile
/usr/lib/R/site-library/CNEr/scripts/danRer10Pipeline.R
/usr/lib/R/site-library/CNEr/scripts/prepareData.R
/usr/share/doc/r-bioc-cner/changelog.Debian.gz
/usr/share/doc/r-bioc-cner/copyright
/usr/share/doc/r-bioc-cner/run-unit-test
/usr/share/doc/r-bioc-cner/tests/testthat.R
/usr/share/doc/r-bioc-cner/tests/testthat/test_Axt.R.gz
/usr/share/doc/r-bioc-cner/tests/testthat/test_CNE.R
/usr/share/doc/r-bioc-cner/tests/testthat/test_GRBs.R
/usr/share/doc/r-bioc-cner/tests/testthat/test_GRangePairs.R
/usr/share/doc/r-bioc-cner/tests/testthat/test_IO.R.gz
/usr/share/doc/r-bioc-cner/tests/testthat/test_ceScan.R
/usr/share/doc/r-bioc-cner/tests/testthat/test_reverseCigar.R
/usr/share/lintian/overrides/r-bioc-cner

Changelog

2018-11-14 - Dylan Aïssi <daissi@debian.org>
r-bioc-cner (1.18.1+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* dh-update-R to update Build-Depends
2018-09-09 - Andreas Tille <tille@debian.org>
r-bioc-cner (1.16.1+dfsg-1) unstable; urgency=medium
* Initial release (closes: #900412)

See Also

Package Description
r-bioc-cummerbund_2.24.0-2_all.deb tool for analysis of Cufflinks RNA-Seq output
r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb BioConductor delayed operations on array-like objects
r-bioc-deseq2_1.22.2+dfsg-1_amd64.deb R package for RNA-Seq Differential Expression Analysis
r-bioc-dirichletmultinomial_1.24.1-1_amd64.deb Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
r-bioc-dnacopy_1.56.0-1_amd64.deb R package: DNA copy number data analysis
r-bioc-ebseq_1.22.1-2_all.deb R package for RNA-Seq Differential Expression Analysis
r-bioc-ensembldb_2.6.5+dfsg-1_all.deb GNU R utilities to create and use an Ensembl based annotation database
r-bioc-genefilter_1.64.0-1_amd64.deb methods for filtering genes from microarray experiments
r-bioc-geneplotter_1.60.0-1_all.deb R package of functions for plotting genomic data
r-bioc-genomeinfodb_1.18.1-1_all.deb BioConductor utilities for manipulating chromosome identifiers
r-bioc-genomeinfodbdata_1.2.0-1_all.deb BioConductor species and taxonomy ID look up tables
r-bioc-genomicalignments_1.18.1-1_amd64.deb BioConductor representation and manipulation of short genomic alignments
r-bioc-genomicfeatures_1.34.3+dfsg-1_all.deb GNU R tools for making and manipulating transcript centric annotations
r-bioc-genomicranges_1.34.0+dfsg-1_amd64.deb BioConductor representation and manipulation of genomic intervals
r-bioc-go.db_3.7.0-1_all.deb annotation maps describing the entire Gene Ontology
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