python3-gffutils_0.9-1_all.deb


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Description

python3-gffutils - Work with GFF and GTF files in a flexible database framework

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename python3-gffutils_0.9-1_all.deb
Package name python3-gffutils
Package version 0.9
Package release 1
Package architecture all
Package type deb
Category science
Homepage https://daler.github.io/gffutils
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 992.18 KB
Installed size 9.37 MB
A Python package for working with and manipulating the GFF and GTF format
files typically used for genomic annotations.  Files are loaded into a
sqlite3 database, allowing much more complex manipulation of hierarchical
features (e.g., genes, transcripts, and exons) than is possible with
plain-text methods alone.

Alternatives

Package Version Architecture Repository
python3-gffutils_0.9-1_all.deb 0.9 all Debian Main
python3-gffutils - - -

Requires

Name Value
python3-argcomplete -
python3-argh -
python3-pyfaidx -
python3-simplejson -
python3-six -
python3:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package python3-gffutils_0.9-1_all.deb
Source Package python-gffutils

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python3-gffutils deb package:
    # sudo apt-get install python3-gffutils

Files

Path
/usr/bin/gffutils-cli
/usr/lib/python3/dist-packages/gffutils/__init__.py
/usr/lib/python3/dist-packages/gffutils/attributes.py
/usr/lib/python3/dist-packages/gffutils/bins.py
/usr/lib/python3/dist-packages/gffutils/biopython_integration.py
/usr/lib/python3/dist-packages/gffutils/constants.py
/usr/lib/python3/dist-packages/gffutils/convert.py
/usr/lib/python3/dist-packages/gffutils/create.py
/usr/lib/python3/dist-packages/gffutils/exceptions.py
/usr/lib/python3/dist-packages/gffutils/feature.py
/usr/lib/python3/dist-packages/gffutils/gffwriter.py
/usr/lib/python3/dist-packages/gffutils/helpers.py
/usr/lib/python3/dist-packages/gffutils/inspect.py
/usr/lib/python3/dist-packages/gffutils/inspection.py
/usr/lib/python3/dist-packages/gffutils/interface.py
/usr/lib/python3/dist-packages/gffutils/iterators.py
/usr/lib/python3/dist-packages/gffutils/parser.py
/usr/lib/python3/dist-packages/gffutils/pybedtools_integration.py
/usr/lib/python3/dist-packages/gffutils/version.py
/usr/lib/python3/dist-packages/gffutils-0.9.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/gffutils-0.9.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/gffutils-0.9.egg-info/requires.txt
/usr/lib/python3/dist-packages/gffutils-0.9.egg-info/top_level.txt
/usr/lib/python3/dist-packages/gffutils/scripts/gffutils-flybase-convert.py
/usr/lib/python3/dist-packages/gffutils/test/__init__.py
/usr/lib/python3/dist-packages/gffutils/test/attr_test_cases.py
/usr/lib/python3/dist-packages/gffutils/test/expected.py
/usr/lib/python3/dist-packages/gffutils/test/feature_test.py
/usr/lib/python3/dist-packages/gffutils/test/helpers_test.py
/usr/lib/python3/dist-packages/gffutils/test/parser_test.py
/usr/lib/python3/dist-packages/gffutils/test/performance_test.py
/usr/lib/python3/dist-packages/gffutils/test/test.py
/usr/lib/python3/dist-packages/gffutils/test/test_biopython_integration.py
/usr/lib/python3/dist-packages/gffutils/test/data/F3-unique-3.v2.gff
/usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff
/usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gtf
/usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt
/usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt
/usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt
/usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_ann_gff.txt
/usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_dna_shortened.fa
/usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_shortened_gff.txt
/usr/lib/python3/dist-packages/gffutils/test/data/dm6-chr2L.fa
/usr/lib/python3/dist-packages/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff
/usr/lib/python3/dist-packages/gffutils/test/data/download-large-annotation-files.sh
/usr/lib/python3/dist-packages/gffutils/test/data/ensembl_gtf.txt
/usr/lib/python3/dist-packages/gffutils/test/data/gencode-v19.gtf
/usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.5000_gene_ids.txt
/usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt
/usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.chromsizes.txt
/usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3
/usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3.gz
/usr/lib/python3/dist-packages/gffutils/test/data/glimmer_nokeyval.gff3
/usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3
/usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff
/usr/lib/python3/dist-packages/gffutils/test/data/jgi_gff2.txt
/usr/lib/python3/dist-packages/gffutils/test/data/keep-order-test.gtf
/usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff
/usr/lib/python3/dist-packages/gffutils/test/data/mouse_extra_comma.gff3
/usr/lib/python3/dist-packages/gffutils/test/data/ncbi_gff3.txt
/usr/lib/python3/dist-packages/gffutils/test/data/nonascii
/usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff
/usr/lib/python3/dist-packages/gffutils/test/data/unsanitized.gff
/usr/lib/python3/dist-packages/gffutils/test/data/wormbase_gff2.txt
/usr/lib/python3/dist-packages/gffutils/test/data/wormbase_gff2_alt.txt
/usr/share/doc/python3-gffutils/README.Debian
/usr/share/doc/python3-gffutils/changelog.Debian.gz
/usr/share/doc/python3-gffutils/copyright

Changelog

2019-01-17 - Steffen Moeller <moeller@debian.org>
python-gffutils (0.9-1) unstable; urgency=medium
* Reupload after removal (#894298)
* New upstream version.
* d/u/metadata: Added RRIDs
* Added myself to uploaders.
* Changed section from python to science
* TODO: build documentation
2017-01-15 - Michael R. Crusoe <michael.crusoe@gmail.com>
python-gffutils (0.8.7.1-1) REMOVED; urgency=medium
* Initial release. (Closes: #851488)

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