python-kineticstools_0.6.1+git20180425.27a1878-2_amd64.deb


Advertisement

Description

python-kineticstools - detection of DNA modifications (Python 2 library)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename python-kineticstools_0.6.1+git20180425.27a1878-2_amd64.deb
Package name python-kineticstools
Package version 0.6.1+git20180425.27a1878
Package release 2
Package architecture amd64
Package type deb
Category python
Homepage https://github.com/PacificBiosciences/kineticsTools
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 48.38 KB
Installed size 272.00 KB
Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
sequencing data. This tool implements the P_ModificationDetection module in
SMRT® Portal, used by the RS_Modification_Detection and
RS_Modifications_and_Motif_Detection protocol. Researchers interested in
understanding or extending the modification detection algorithms can use these
tools as a starting point.
This package is part of the SMRTAnalysis suite and contains the backend
Python 2 library.

Alternatives

Package Version Architecture Repository
python-kineticstools - - -

Requires

Name Value
kineticstools-data = 0.6.1+git20180425.27a1878-2
libc6 >= 2.2.5
python << 2.8
python >= 2.7~
python-h5py -
python-numpy -
python-pbcommand -
python-pbcore -
python-scipy -
python:any >= 2.7~
python:any << 2.8

Download

Type URL
Mirror ftp.br.debian.org
Binary Package python-kineticstools_0.6.1+git20180425.27a1878-2_amd64.deb
Source Package kineticstools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-kineticstools deb package:
    # sudo apt-get install python-kineticstools

Files

Path
/usr/lib/python2.7/dist-packages/kineticsTools/BasicLdaEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/KineticWorker.py
/usr/lib/python2.7/dist-packages/kineticsTools/MedakaLdaEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/MixtureEstimationMethods.py
/usr/lib/python2.7/dist-packages/kineticsTools/ModificationDecode.py
/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteCommon.py
/usr/lib/python2.7/dist-packages/kineticsTools/MultiSiteDetection.py
/usr/lib/python2.7/dist-packages/kineticsTools/PositiveControlEnricher.py
/usr/lib/python2.7/dist-packages/kineticsTools/ReferenceUtils.py
/usr/lib/python2.7/dist-packages/kineticsTools/ResultWriter.py
/usr/lib/python2.7/dist-packages/kineticsTools/WorkerProcess.py
/usr/lib/python2.7/dist-packages/kineticsTools/__init__.py
/usr/lib/python2.7/dist-packages/kineticsTools/ipdModel.py
/usr/lib/python2.7/dist-packages/kineticsTools/ipdSummary.py
/usr/lib/python2.7/dist-packages/kineticsTools/pipelineTools.py
/usr/lib/python2.7/dist-packages/kineticsTools/resources
/usr/lib/python2.7/dist-packages/kineticsTools/sharedArray.py
/usr/lib/python2.7/dist-packages/kineticsTools/summarizeModifications.py
/usr/lib/python2.7/dist-packages/kineticsTools/tree_predict.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/kineticsTools-0.6.1.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/kineticsTools/internal/__init__.py
/usr/lib/python2.7/dist-packages/kineticsTools/internal/basic.py
/usr/lib/python2.7/dist-packages/kineticsTools/tasks/__init__.py
/usr/lib/python2.7/dist-packages/kineticsTools/tasks/gather_kinetics_h5.py
/usr/share/doc/python-kineticstools/changelog.Debian.gz
/usr/share/doc/python-kineticstools/changelog.gz
/usr/share/doc/python-kineticstools/copyright

Changelog

2019-02-14 - Andreas Tille <tille@debian.org>
kineticstools (0.6.1+git20180425.27a1878-2) unstable; urgency=medium
* Ignore deprecation warnings breaking test suite
Closes: #921382
* Add myself to Uploaders since Afif has removed himself (Thanks for your
work on this package, Afif)
2019-01-29 - Andreas Tille <tille@debian.org>
kineticstools (0.6.1+git20180425.27a1878-1) unstable; urgency=medium
* Team upload.
* Use Git mode in watch file
* debhelper 12
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
* Secure URI in copyright format
* Build-Depends: python-pytest
2017-01-15 - Afif Elghraoui <afif@debian.org>
kineticstools (0.6.1+20161222-1) unstable; urgency=medium
[ Andreas Tille ]
* Add fake watch file to silence uscan
[ Afif Elghraoui ]
* New upstream revision (Closes: #848542)
* Drop Files-Excluded
* Drop patch applied upstream
* Add README.source to explain how to get new upstream versions
* Update patches without undoing their effects
* autopkgtests: Don't run extra-tests and long-tests
* Suggest python-pybigwig
[ Sascha Steinbiss ]
* Fix man page building
* Spelling corrections
* Enable hardening
2016-07-16 - Afif Elghraoui <afif@debian.org>
kineticstools (0.5.2+dfsg-2) unstable; urgency=low
* Don't install spurious python package "bin" (Closes: #831218)
2016-07-02 - Afif Elghraoui <afif@debian.org>
kineticstools (0.5.2+dfsg-1) unstable; urgency=medium
* Imported Upstream version 0.5.2+dfsg
(upstream git 9df3568 - 2016-03-22)
* Fix detection of compiled extension
* Refresh patches
* Bump minimum version of dependencies
* Bump Standards-Version to 3.9.8
* Globally use C.UTF-8 locale
* Enable build-time tests with respected exit code
* Set up autopkgtest
2016-03-16 - Afif Elghraoui <afif@debian.org>
kineticstools (0.5.1+20150828+git3aa3d96+dfsg-2) unstable; urgency=low
* Update Standards-Version
* Use https for VCS links
* Separate large data files into an arch-independent binary package
2015-12-09 - Afif Elghraoui <afif@ghraoui.name>
kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) unstable; urgency=low
* Initial release (Closes: #797676)

See Also

Package Description
python-kitchen-doc_1.2.5-4_all.deb Python library of containers, text and i18n helpers (common documentation)
python-kitchen_1.2.5-4_all.deb Python library of containers, text and i18n helpers (Python 2)
python-kiwi_1.9.22-4_all.deb a graphical framework to construct simple UI
python-kiwisolver_1.0.1-2+b1_amd64.deb fast implementation of the Cassowary constraint solver - Python 2.X
python-kjbuckets_1.0.0-16_amd64.deb Set and graph data types for Python
python-klaus_1.3.0-2_all.deb simple easy-to-set-up Git web viewer
python-kml_1.3.0-7_amd64.deb Library to manipulate KML 2.2 OGC standard files - Python extension
python-kmodpy_0.1.10-2.1_amd64.deb Python binding for kmod
python-kolabformat_1.1.6-4_amd64.deb Python 2 bindings for Kolab Format 3.0 XML parsing
python-kombu-doc_4.2.1-3_all.deb AMQP Messaging Framework for Python (Documentation)
python-kombu_4.2.1-3_all.deb AMQP Messaging Framework for Python
python-krbv_1.0.90-1_amd64.deb Python extension module for Kerberos 5
python-ktoblzcheck_1.49-5_all.deb library for verification of account numbers and bank codes (Python bindings)
python-kubernetes_7.0.0~a1-1_all.deb Kubernetes Python client - Python 2.7
python-l20n_4.0.0~a1-3_all.deb Mozilla Web localization framework (Python 2)
Advertisement
Advertisement