pycorrfit_1.1.5+dfsg-1_amd64.deb


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Description

pycorrfit - tool for fitting correlation curves on a logarithmic plot

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename pycorrfit_1.1.5+dfsg-1_amd64.deb
Package name pycorrfit
Package version 1.1.5+dfsg
Package release 1
Package architecture amd64
Package type deb
Category interface::graphical interface::x11 python role::program
Homepage http://fcs-analysis.github.io/PyCorrFit/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 805.92 KB
Installed size 1.93 MB
PyCorrFit is a general-purpose FCS evaluation software that,
amongst other formats, supports the established Zeiss ConfoCor3 ~.fcs
file format. PyCorrFit comes with several built-in model functions,
covering a wide range of applications in standard confocal FCS.
In addition, it contains equations dealing with different excitation
geometries like total internal reflection (TIR).

Alternatives

Package Version Architecture Repository
pycorrfit_1.1.5+dfsg-1_i386.deb 1.1.5+dfsg i386 Debian Main
pycorrfit - - -

Requires

Name Value
libc6 >= 2.4
python3 << 3.8
python3 >= 3.7~
python3-lmfit >= 0.9.2
python3-matplotlib -
python3-numpy -
python3-scipy -
python3-simplejson -
python3-sympy -
python3-wxgtk4.0 -
python3-yaml -
python3:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package pycorrfit_1.1.5+dfsg-1_amd64.deb
Source Package pycorrfit

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pycorrfit deb package:
    # sudo apt-get install pycorrfit

Files

Path
/usr/bin/pycorrfit
/usr/lib/pycorrfit/pycorrfit_run
/usr/lib/pycorrfit/pycorrfit/PyCorrFit.py
/usr/lib/pycorrfit/pycorrfit/__init__.py
/usr/lib/pycorrfit/pycorrfit/__main__.py
/usr/lib/pycorrfit/pycorrfit/_version.py
/usr/lib/pycorrfit/pycorrfit/_version_save.py
/usr/lib/pycorrfit/pycorrfit/correlation.py
/usr/lib/pycorrfit/pycorrfit/fit.py
/usr/lib/pycorrfit/pycorrfit/meta.py
/usr/lib/pycorrfit/pycorrfit/openfile.py
/usr/lib/pycorrfit/pycorrfit/trace.py
/usr/lib/pycorrfit/pycorrfit-2018.11.27.dev22.egg-info/PKG-INFO
/usr/lib/pycorrfit/pycorrfit-2018.11.27.dev22.egg-info/dependency_links.txt
/usr/lib/pycorrfit/pycorrfit-2018.11.27.dev22.egg-info/entry_points.txt
/usr/lib/pycorrfit/pycorrfit-2018.11.27.dev22.egg-info/requires.txt
/usr/lib/pycorrfit/pycorrfit-2018.11.27.dev22.egg-info/top_level.txt
/usr/lib/pycorrfit/pycorrfit/gui/__init__.py
/usr/lib/pycorrfit/pycorrfit/gui/doc.py
/usr/lib/pycorrfit/pycorrfit/gui/edclasses.py
/usr/lib/pycorrfit/pycorrfit/gui/frontend.py
/usr/lib/pycorrfit/pycorrfit/gui/icon.py
/usr/lib/pycorrfit/pycorrfit/gui/main.py
/usr/lib/pycorrfit/pycorrfit/gui/misc.py
/usr/lib/pycorrfit/pycorrfit/gui/page.py
/usr/lib/pycorrfit/pycorrfit/gui/plotting.py
/usr/lib/pycorrfit/pycorrfit/gui/threaded_progress.py
/usr/lib/pycorrfit/pycorrfit/gui/update.py
/usr/lib/pycorrfit/pycorrfit/gui/usermodel.py
/usr/lib/pycorrfit/pycorrfit/gui/wxutils.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/__init__.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/average.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/background.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/batchcontrol.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/chooseimport.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/comment.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/datarange.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/example.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/globalfit.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/info.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/overlaycurves.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/parmrange.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/plotexport.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/simulation.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/statistics.py
/usr/lib/pycorrfit/pycorrfit/gui/tools/trace.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_1C.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_2D2D.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_3D2D.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_3D2Dkin_Ries.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_3D3D.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_gaussian_1C.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_gaussian_3D2D.py
/usr/lib/pycorrfit/pycorrfit/models/MODEL_TIRF_gaussian_3D3D.py
/usr/lib/pycorrfit/pycorrfit/models/__init__.py
/usr/lib/pycorrfit/pycorrfit/models/classes.py
/usr/lib/pycorrfit/pycorrfit/models/control.py
/usr/lib/pycorrfit/pycorrfit/models/cp_confocal.py
/usr/lib/pycorrfit/pycorrfit/models/cp_mix.py
/usr/lib/pycorrfit/pycorrfit/models/cp_triplet.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_2d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_3d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_3d_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_2d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_3d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_3d_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_3d_3d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_t_3d_3d_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_tt_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_tt_2d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_tt_3d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_tt_3d_2d.py
/usr/lib/pycorrfit/pycorrfit/models/model_confocal_tt_3d_3d.py
/usr/lib/pycorrfit/pycorrfit/readfiles/__init__.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_ASC_ALV.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_CSV_PyCorrFit.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_FCS_Confocor3.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_SIN_correlator_com.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_mat_ries.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_PicoQuant.py
/usr/lib/pycorrfit/pycorrfit/readfiles/util.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/__init__.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/__version__.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/correlation_methods.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/correlation_objects.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/fib4.cpython-37m-x86_64-linux-gnu.so
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/fib4.pyx
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/fitting_methods.py
/usr/lib/pycorrfit/pycorrfit/readfiles/read_pt3_scripts/import_methods.py
/usr/lib/python3/dist-packages/pycorrfit_doc/CHANGELOG
/usr/lib/python3/dist-packages/pycorrfit_doc/PyCorrFit_doc.pdf
/usr/share/applications/pycorrfit.desktop
/usr/share/doc/pycorrfit/README.Debian
/usr/share/doc/pycorrfit/changelog.Debian.gz
/usr/share/doc/pycorrfit/changelog.gz
/usr/share/doc/pycorrfit/copyright
/usr/share/doc/pycorrfit/examples/tests.tar.xz
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_CS_2D+2D+S+T.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_CS_3D+S+T.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_Exp_correlated_noise.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_SFCS_1C_2D_Autocorrelation.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_SFCS_1C_2D_Cross-correlation.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/ExampleFunc_TIRF_zOnly.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/Model_AC_3D+T_confocal.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/Model_Flow_AC_3D_confocal.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/Model_Flow_CC_Backward_3D_confocal.txt
/usr/share/doc/pycorrfit/examples/external_model_functions/Model_Flow_CC_Forward_3D_confocal.txt
/usr/share/doc/pycorrfit/examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs
/usr/share/doc/pycorrfit/examples/sample_sessions/ConfocalFCS_Alexa488_xcorr.pcfs
/usr/share/man/man1/pycorrfit.1.gz
/usr/share/pixmaps/pycorrfit.xpm
/usr/share/python3/runtime.d/pycorrfit.rtupdate

Changelog

2018-12-11 - Alexandre Mestiashvili <mestia@debian.org>
pycorrfit (1.1.5+dfsg-1) unstable; urgency=medium
* New upstream version 1.1.5+dfsg
* Drop patch applied by upstream
2018-11-27 - Alexandre Mestiashvili <mestia@debian.org>
pycorrfit (1.1.4+dfsg-3) unstable; urgency=medium
* Add patch tex_pkg_order.patch, thanks to Hilmar Preu├če. Closes: #914729
* d/rules:
- respect nocheck in DEB_BUILD_OPTIONS
- run latex, bibtex, latex, latex mantra sequentially in order to build
bibliography
2018-10-11 - Alexandre Mestiashvili <mestia@debian.org>
pycorrfit (1.1.4+dfsg-2) unstable; urgency=medium
* Remove libpython3-all-dev, Closes: #910750
2018-09-27 - Alexandre Mestiashvili <mestia@debian.org>
pycorrfit (1.1.4+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* upstream/metadata RRID->SciCrunch
[ Andreas Tille ]
* Remove invalid fields
[ Alexandre Mestiashvili ]
* Add .readthedocs.yml to Files-Excluded list
* New upstream version 1.1.1+dfsg
* New upstream version 1.1.4+dfsg
* d/control:
- bump policy to 4.2.1, debhelper to 11
- update VCS headers to point to salsa
- update uploaders email
- switch to python3
- add python3-dev, python3-wxgtk4.0, python3-matplotlib,
python3-simplejson, libpython3-all-dev
- use ${python3:Depends}, drop libpython2.7-dev
* Update d/rules:
- --with python3
- don't install modules as public pmodules
use PYBUILD_INSTALL_ARGS_python3=--install-lib=/usr/lib/pycorrfit
- exclude __pycache and pyc files with dh_install
- remove README from modules dir
- move and symlink pycorrfit script
- archive and install tests to examples
* Update d/source/options to ignore pycorrfit/_version_save.py
* Drop obsoleted patch fix_entry_point_for_gui.patch
* Update copyright, add new files
* Add autopkgtests, skip tests requiring network access
2017-10-02 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
pycorrfit (1.0.1+dfsg-2) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added publication
- Added notion of all registries yet lacking this software
[ Alexandre Mestiashvili ]
* Update homepage url in d/control
* Add faketime to Build-Depends, bump Standards-Version to 4.1.1
* Update d/rules, make build reproducible
2017-09-06 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
pycorrfit (1.0.1+dfsg-1) unstable; urgency=medium
* Update d/source/options to exclude _version_save.py rubbish
* Update Files-Excludes list in d/copyright
* New upstream version 1.0.1+dfsg
* Bump Standards-Version to 4.1.0
* Add patch fixing GUI start issue
2017-06-22 - Andreas Tille <tille@debian.org>
pycorrfit (1.0.0+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 10
* d/watch: version=4
* update Build-Depends from latex-xcolor to texlive-latex-recommended
Closes: #865244
* d/rules: make use of DEB_SOURCE
* Standards-Version: 4.0.0 (no changes needed)
2017-06-05 - Andreas Tille <tille@debian.org>
pycorrfit (0.9.9+dfsg-2) unstable; urgency=medium
* Recommends: s/texlive-math-extra/texlive-science/
Closes: #864226
2016-06-24 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
pycorrfit (0.9.9+dfsg-1) unstable; urgency=medium
* Drop get-orig-source target
* Imported Upstream version 0.9.8+dfsg
* Add python-pytest-runner to Build-Depends
* Apply cme fix dpkg
* Enable hardening=+bindnow
* Update copyright years, remove non-existing excluded file
* Imported Upstream version 0.9.9+dfsg
* drop patch fixing pdf documentation, remove empty d/patches
* Disable tests for now
2016-01-06 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
pycorrfit (0.9.5+dfsg-1) unstable; urgency=medium
* Imported Upstream version 0.9.5+dfsg

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