muscle - Multiple alignment program of protein sequences

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename muscle_3.8.1551-2_amd64.deb
Package name muscle
Package version 3.8.1551
Package release 2
Package architecture amd64
Package type deb
Category biology::format:aln biology::peptidic field::biology field::biology:bioinformatics implemented-in::c++ interface::commandline role::program science scope::utility use::comparing works-with-format::plaintext works-with::TODO
License -
Maintainer Debian Med Packaging Team <>
Download size 239.19 KB
Installed size 692.00 KB
MUSCLE is a multiple alignment program for protein sequences. MUSCLE
stands for multiple sequence comparison by log-expectation. In the
authors tests, MUSCLE achieved the highest scores of all tested
programs on several alignment accuracy benchmarks, and is also one of
the fastest programs out there.


Package Version Architecture Repository
muscle_3.8.1551-2_i386.deb 3.8.1551 i386 Debian Main
muscle - - -


Name Value
libc6 >= 2.27
libgcc1 >= 1:3.0
libstdc++6 >= 5


Name Value
muscle-doc -


Name Value
muscle-doc -


Name Value
muscle-doc -


Type URL
Binary Package muscle_3.8.1551-2_amd64.deb
Source Package muscle

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install muscle deb package:
    # sudo apt-get install muscle




2019-02-22 - Andreas Tille <>
muscle (1:3.8.1551-2) unstable; urgency=medium
[ Helmut Grohne ]
* Fix FTCBFS: Pass C++ compilers as GPP. (Closes: #922994)
[ Andreas Tille ]
* Delete outdated README.Debian
* debhelper 12
* Standards-Version: 4.3.0
2018-10-29 - Andreas Tille <>
muscle (1:3.8.1551-1) unstable; urgency=medium
* New upstream version
* Review watch file (no need to exclude files any more
* Remove useless get-orig-source target
* Source is now in main dir
* debhelper 11
* Point Vcs fields to
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
2017-08-08 - Sascha Steinbiss <>
muscle (1:3.8.31+dfsg-3) unstable; urgency=medium
* Team upload.
* Fix FTCBFS: Do not hard code build architecture compiler g++.
Thanks to Helmut Grohne for the patch.
Closes: #871513
* Bump Standards-Version.
2016-06-30 - Canberk Koç <>
muscle (1:3.8.31+dfsg-2) unstable; urgency=low
* Team upload
[ Steffen Moeller and Hervé Ménager]
* Introducing EDAM ontology annotation in
[ Canberk Koç ]
* autopkgtest added
* debian/example.fa added
[ Andreas Tille ]
* cme fix dpkg-control
* hardening=+all
2016-01-18 - Andreas Tille <>
muscle (1:3.8.31+dfsg-1) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream/metadata: Added citations
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- debian/source/format: 3.0 (quilt)
* Moved packaging from SVN to Git
* cme fix dpkg-control
* Mark repackaged orig.tar properly with +dfsg
* debhelper 9
* Remove information from README.Debian that became redundant
by debian/upstream/metadata
* Remove README.source since it is redundant by debian/control
[ Dylan Aïssi ]
* debian/copyright: Fixed lintian dep5-copyright-license-name-not-unique
2011-11-13 - Charles Plessy <>
muscle (1:3.8.31-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release (Closes: #643443).
* debian/control: Enhances: t-coffee.
* Changed the doc-base section according to the new policy.
* Updated my email address.
* Updated debian/watch to new version scheme and download location.
* Repack usptream archive and implemented a get-orig-source target
(debian/rules, debian/README.source, debian/copyright).
* Use Debhelper 8 (debian/control, debian/compat).
* Build directly from debian/rules targets.
* Corrected VCS URLs in debian/control.
* Conforms to Debian Policy 3.9.2 (debian/control, no changes needed).
[ David Paleino ]
* removed myself from Uploaders (debian/control).
2008-02-14 - Charles Plessy <>
muscle (3.70+fix1-2) unstable; urgency=low
* debian/control Conflicts: and Replaces: muscle-doc (Closes: #465607)
2008-02-06 - Charles Plessy <>
muscle (3.70+fix1-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream version, buildable with GCC 4.3 (Closes: #462707)
The version number was not increased upstream when the sources were
changed. We name this new version in Debian "3.70+fix1".
* Updated manual page.
* Converted the source package to CDBS, dropped Makefile patch.
* Fused muscle and muscle-doc.
[ Nelson A. de Oliveira ]
* Fixed watch file (Closes: #462827)

See Also

Package Description
muse-el_3.20+dfsg-4_all.deb Transition Package, muse-el to elpa-muse
muse_3.0.2+ds1-1_amd64.deb Qt-based audio/MIDI sequencer
musepack-tools_0.1~r495-1+b2_amd64.deb MusePack commandline utilities
musescore-common_2.3.2+dfsg2-7~deb10u1_all.deb MuseScore (music composition and notation) shared files
musescore-general-soundfont-lossless_0.1.4-1_all.deb General SoundFont from MuseScore (uncompressed)
musescore-general-soundfont-small_0.1.4-1_all.deb General SoundFont from MuseScore (light version)
musescore-general-soundfont_0.1.4-1_all.deb General SoundFont from MuseScore (full version)
musescore_2.3.2+dfsg2-7~deb10u1_amd64.deb cross-platform multi-lingual music composition and notation
music-bin_1.0.7-4+b1_amd64.deb Multi-Simulation Coordinator for MPI -- Utilities
music-doc_1.0.7-4_all.deb Multi-Simulation Coordinator for MPI -- Manual
music123_16.4-3+b1_amd64.deb Command-line shell for sound-file players
musiclibrarian_1.6-2.2_all.deb A simple GUI tool to organize collections of music
musique_1.1-2.1+b1_amd64.deb Simple but sophisticated graphical music player
musl-dev_1.1.21-2_amd64.deb standard C library development files
musl-tools_1.1.21-2_amd64.deb standard C library tools