murasaki-mpi_1.68.6-8+b1_amd64.deb


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Description

murasaki-mpi - homology detection tool across multiple large genomes (MPI-version)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package name murasaki-mpi
Package version 1.68.6
Package release 8+b1
Package architecture amd64
Package type deb
Installed size 3.93 KB
Download size 614.77 KB
Official Mirror ftp.br.debian.org
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
This package provides the MPI-enabled binary for murasaki.  While this
will speed up operation on multi-processor machines it will slow down
on a single processor.

Alternatives

Package Version Architecture Repository
murasaki-mpi_1.68.6-8+b1_i386.deb 1.68.6 i386 Debian Main
murasaki-mpi - - -

Requires

Name Value
libboost system1.67.0
libboost iostreams1.67.0
libboost filesystem1.67.0
libboost-regex1.67.0 >= 1.67.0-10
libc6 >= 2.14
libcrypto++6 -
libgcc1 >= 1:3.0
libopenmpi3 -
libstdc++6 >= 5.2
murasaki common

Download

Type URL
Binary Package murasaki-mpi_1.68.6-8+b1_amd64.deb
Source Package murasaki

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install murasaki-mpi deb package:
    # sudo apt-get install murasaki-mpi

Files

Path
/usr/bin/geneparse-mpi
/usr/bin/mbfa-mpi
/usr/bin/murasaki-mpi
/usr/lib/murasaki/align-and-mpi
/usr/lib/murasaki/align-best-mpi
/usr/lib/murasaki/align-compare-mpi
/usr/lib/murasaki/align-coverage-mpi
/usr/lib/murasaki/align-or-mpi
/usr/lib/murasaki/cgr-compare-mpi
/usr/lib/murasaki/cgr-image-mpi
/usr/lib/murasaki/cgr-image.pl-mpi
/usr/lib/murasaki/cgr-random-mpi
/usr/lib/murasaki/cgr-sample-mpi
/usr/lib/murasaki/testeco-mpi
/usr/share/doc/murasaki-mpi/README.test
/usr/share/doc/murasaki-mpi/changelog.Debian.amd64.gz
/usr/share/doc/murasaki-mpi/changelog.Debian.gz
/usr/share/doc/murasaki-mpi/copyright
/usr/share/man/man1/geneparse-mpi.1.gz
/usr/share/man/man1/mbfa-mpi.1.gz
/usr/share/man/man1/murasaki-mpi.1.gz

Changelog

See murasaki_1.68.6-8+b1_amd64.deb changelog.

See Also

Package Description
murasaki_1.68.6-8+b1_amd64.deb homology detection tool across multiple large genomes
muroar-bin_0.1.13-4_amd64.deb minimalist RoarAudio client library (binary package)
muroard-dev_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon (development files)
muroard_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon
murrine-themes_0.98.11_all.deb themes for gtk2 murrine engine
muscle_3.8.1551-2_amd64.deb Multiple alignment program of protein sequences
muse-el_3.20+dfsg-4_all.deb Transition Package, muse-el to elpa-muse
muse_3.0.2+ds1-1_amd64.deb Qt-based audio/MIDI sequencer
musepack-tools_0.1~r495-1+b2_amd64.deb MusePack commandline utilities
musescore-common_2.3.2+dfsg2-4_all.deb MuseScore (music composition and notation) shared files
musescore-general-soundfont-lossless_0.1.4-1_all.deb General SoundFont from MuseScore (uncompressed)
musescore-general-soundfont-small_0.1.4-1_all.deb General SoundFont from MuseScore (light version)
musescore-general-soundfont_0.1.4-1_all.deb General SoundFont from MuseScore (full version)
musescore_2.3.2+dfsg2-4_amd64.deb cross-platform multi-lingual music composition and notation
music-bin_1.0.7-4+b1_amd64.deb Multi-Simulation Coordinator for MPI -- Utilities
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