mhap - locality-sensitive hashing to detect long-read overlaps

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename mhap_2.1.3+dfsg-2_all.deb
Package name mhap
Package version 2.1.3+dfsg
Package release 2
Package architecture all
Package type deb
Category science
License -
Maintainer Debian Med Packaging Team <>
Download size 156.36 KB
Installed size 192.00 KB
The MinHash Alignment Process (MHAP--pronounced MAP) is a
reference implementation of a probabilistic sequence overlapping
algorithm. Designed to efficiently detect all overlaps between noisy
long-read sequence data. It efficiently estimates Jaccard similarity
by compressing sequences to their representative fingerprints
composed on min-mers (minimum k-mer).


Package Version Architecture Repository
mhap_2.1.3+dfsg-2_all.deb 2.1.3+dfsg all Debian Main
mhap - - -


Name Value
default-jre-headless -
jaligner -
jarwrapper -
libcommons-compress-java -
libfastutil-java -
libguava-java >= 19
libssw-java -


Type URL
Binary Package mhap_2.1.3+dfsg-2_all.deb
Source Package mhap

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mhap deb package:
    # sudo apt-get install mhap




2018-10-17 - Andreas Tille <>
mhap (2.1.3+dfsg-2) unstable; urgency=medium
* Team upload.
* debhelper 11
* Point Vcs fields to
* Standards-Version: 4.2.1
* Drop unused lintian-override
2018-03-16 - Afif Elghraoui <>
mhap (2.1.3+dfsg-1) unstable; urgency=medium
[ Afif Elghraoui ]
* Bump minimum required libguava-java version
* New upstream version 2.1.3+dfsg
* Standards-Version 4.1.3
[ Steffen Moeller, Andreas Tille ]
* Added ref to OMICtools
2016-10-09 - Afif Elghraoui <>
mhap (2.1.1+dfsg-1) unstable; urgency=medium
* Imported Upstream version 2.1.1+dfsg
* Remove duplicate word from package description
2016-07-13 - Afif Elghraoui <>
mhap (2.1+dfsg-1) unstable; urgency=medium
* Avoid dependency on graphics libraries by not using java:Depends
* Imported Upstream version 2.1+dfsg
* Update package's long description
2016-07-13 - Afif Elghraoui <>
mhap (2.0+dfsg-1) unstable; urgency=medium
* Update Standards-Version
* Use https for VCS URLs
* Adjust project homepage
* Imported Upstream version 2.0+dfsg
- Remove obsolete patches
- Update packaging to build with maven.
(Thanks to Tony Mancill for patches and advice)
- Update manpage
- Remove copyright declaration for now non-existent file
* Globally use C.UTF-8 locale
* Don't hardcode package version or classpath in debian/*
* Don't force Java 8
2015-09-13 - Afif Elghraoui <>
mhap (1.6+dfsg-1) unstable; urgency=low
* Initial release (Closes: #796640)

See Also

Package Description
mhc-utils_1.2.1-2_all.deb utilities for the MHC schedule management system
mhc_1.2.1-2_all.deb schedule management tool for Emacs
mhddfs_0.1.39+nmu1+b1_amd64.deb file system for unifying several mount points into one
mhonarc_2.6.19-2_all.deb Mail to HTML converter
mhwaveedit_1.4.23-3_amd64.deb Simple and fast GTK2 sound editor
mia-doctools_2.4.6-4_all.deb Helper scripts for run-time document creation
mia-tools-doc_2.4.6-4_all.deb Cross-referenced documentation of the MIA command line tools
mia-tools_2.4.6-4_amd64.deb Command line tools for gray scale image processing
mia-viewit_1.0.5-2_amd64.deb Viewer program for 3D data sets created by using MIA
mialmpick_0.2.14-2_amd64.deb Tools for landmark picking in 3D volume data sets
miceamaze_4.2.1-3+b1_amd64.deb video game with mice in a maze
micro-httpd_20051212-15.1_amd64.deb really small HTTP server
microbegps_1.0.0-3_all.deb explorative taxonomic profiling tool for metagenomic data
microbiomeutil-data_20101212+dfsg1-2_all.deb Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microbiomeutil_20101212+dfsg1-2_all.deb Microbiome Analysis Utilities