mapsembler2 - bioinformatics targeted assembly software

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename mapsembler2_2.2.4+dfsg-3+b1_amd64.deb
Package name mapsembler2
Package version 2.2.4+dfsg
Package release 3+b1
Package architecture amd64
Package type deb
Category science
License -
Maintainer Debian Med Packaging Team <>
Download size 242.47 KB
Installed size 787.00 KB
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set


Package Version Architecture Repository
mapsembler2_2.2.4+dfsg-3+b1_i386.deb 2.2.4+dfsg i386 Debian Main
mapsembler2 - - -


Name Value
bc -
libc6 >= 2.27
libgcc1 >= 1:3.0
libgomp1 >= 4.9
libhdf5-103 -
libstdc++6 >= 5.2
zlib1g >= 1:


Type URL
Binary Package mapsembler2_2.2.4+dfsg-3+b1_amd64.deb
Source Package mapsembler2

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mapsembler2 deb package:
    # sudo apt-get install mapsembler2




2018-11-03 - Andreas Tille <>
mapsembler2 (2.2.4+dfsg-3) unstable; urgency=medium
* Provide mapsembler2_extend as symlink to mapsembler_extend since
it is used in pipeline script (Thanks for the hint to Horacio
Montenegro <>)
Closes: #912662
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
2018-10-10 - Andreas Tille <>
mapsembler2 (2.2.4+dfsg-2) unstable; urgency=medium
[ Steffen Moeller ]
* Created debian/upstream/metadata
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to
* Standards-Version: 4.2.1
* d/rules:
- Drop unneeded get-orig-source target
- Do not parse d/changelog
* Fix spelling
* Create manpages before package creation
2017-09-26 - Andreas Tille <>
mapsembler2 (2.2.4+dfsg-1) unstable; urgency=medium
* New upstream version
* Moved packaging from SVN to Git
* d/watch:
- version=4
- fix URL
- recompression with xz
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
2016-09-09 - Andreas Tille <>
mapsembler2 (2.2.3+dfsg-3) unstable; urgency=medium
* Fix type of prefix_trashable since gcc-5 is picky about it (Thanks to
Gianfranco Costamagna <> for the hint)
Closes: #797526
* cme fix dpkg-control
* DEP5 syntax
* hardening=+all
[ Olivier Sallou ]
* d/copyright: add Upstream-Contact
2014-10-26 - Andreas Tille <>
mapsembler2 (2.2.3+dfsg-2) unstable; urgency=medium
* Some DEP5 fixes
* Fix clean target
Closes: #766791
* cme fix dpkg-control
* [O. Sallou] d/control: limit target archs, upstream code uses some code
not valid on other archs, could not find an appropriate patch for this
(lower #765285 to normal).
2014-09-19 - Olivier Sallou <>
mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium
* New upstream release
* Fix some compilation issues
* Fix FTBS on non x86 (Closes: #765285).
2014-08-20 - Olivier Sallou <>
mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium
[Gilles Filippini <> ]
* Support hdf5 1.8.13 new packaging layout (Closes: #758730).
* Fix FTBFS due to broken help2man call in debian/rules.
2014-08-19 - Olivier Sallou <>
mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium
* Fix kissreads file conflict with discoSnp (Closes: #758648).
2014-05-29 - Olivier Sallou <>
mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium
* New upstream release
Change of license to AGPL-3
2014-02-21 - Olivier Sallou <>
mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low
* New upstream release

See Also

Package Description
mapserver-bin_7.2.2-1_amd64.deb MapServer utilities
mapserver-doc_7.2.2-1_all.deb documentation for MapServer
maptool_0.5.3+dfsg.1-1_amd64.deb Converts OpenStreetMap maps to Navit
maptransfer-server_0.3-2_all.deb upload/download maps to/from a VALVe game server (Server)
maptransfer_0.3-2_all.deb upload/download maps to/from a VALVe game server (Client)
maq_0.7.1-8_amd64.deb maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview_0.2.5-9_amd64.deb graphical read alignment viewer for short gene sequences
maradns-deadwood_2.0.13-1.2+b1_amd64.deb simple security-focused recursive Domain Name Service server
maradns-docs_2.0.13-1.2_all.deb upstream documentation for the MaraDNS Domain Name Service server
maradns-zoneserver_2.0.13-1.2+b1_amd64.deb complementary server process to TCP functions for MaraDNS
maradns_2.0.13-1.2+b1_amd64.deb simple security-focused authoritative Domain Name Service server
marble-data_17.08.3-3.2_all.deb data files for Marble
marble-maps_17.08.3-3.2_amd64.deb globe and map widget for mobile form factors
marble-plugins_17.08.3-3.2_amd64.deb plugins for Marble
marble-qt-data_17.08.3-3.2_all.deb Qt-only data files for Marble