macs_2.1.2.1-1_amd64.deb


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Description

macs - Model-based Analysis of ChIP-Seq on short reads sequencers

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename macs_2.1.2.1-1_amd64.deb
Package name macs
Package version 2.1.2.1
Package release 1
Package architecture amd64
Package type deb
Category science
Homepage https://github.com/taoliu/MACS/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 2.34 MB
Installed size 5.42 MB
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.

Alternatives

Package Version Architecture Repository
macs_2.1.2.1-1_i386.deb 2.1.2.1 i386 Debian Main
macs - - -

Requires

Name Value
cython -
libc6 >= 2.22
python << 2.8
python >= 2.7~
python-numpy -
python:any >= 2.7~
python:any << 2.8

Download

Type URL
Mirror ftp.br.debian.org
Binary Package macs_2.1.2.1-1_amd64.deb
Source Package macs

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install macs deb package:
    # sudo apt-get install macs

Files

Path
/usr/bin/macs2
/usr/lib/python2.7/dist-packages/MACS2/Constants.py
/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
/usr/lib/python2.7/dist-packages/MACS2/PeakDetect.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/PeakModel.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/Pileup.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/Prob.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/Signal.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/Statistics.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/__init__.py
/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/hashtable.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py
/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py
/usr/lib/python2.7/dist-packages/MACS2-2.1.2.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/MACS2-2.1.2.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/MACS2-2.1.2.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/MACS2-2.1.2.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/MACS2/IO/BedGraph.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/BedGraphIO.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py
/usr/lib/python2.7/dist-packages/MACS2/IO/CallPeakUnit.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/FixWidthTrack.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/PairedEndTrack.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/Parser.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/PeakIO.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/ScoreTrack.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py
/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py
/usr/share/doc/macs/README.md.gz
/usr/share/doc/macs/README.test
/usr/share/doc/macs/changelog.Debian.gz
/usr/share/doc/macs/changelog.gz
/usr/share/doc/macs/copyright
/usr/share/doc/macs/run-unit-test
/usr/share/doc/macs/examples/aluY.chr1.bed.gz
/usr/share/doc/macs/examples/gerp.chr1.bed.gz
/usr/share/lintian/overrides/macs
/usr/share/man/man1/macs2.1.gz
/usr/share/man/man1/macs2_bdgbroadcall.1.gz
/usr/share/man/man1/macs2_bdgcmp.1.gz
/usr/share/man/man1/macs2_bdgdiff.1.gz
/usr/share/man/man1/macs2_bdgopt.1.gz
/usr/share/man/man1/macs2_bdgpeakcall.1.gz
/usr/share/man/man1/macs2_callpeak.1.gz
/usr/share/man/man1/macs2_cmbreps.1.gz
/usr/share/man/man1/macs2_filterdup.1.gz
/usr/share/man/man1/macs2_pileup.1.gz
/usr/share/man/man1/macs2_predictd.1.gz
/usr/share/man/man1/macs2_randsample.1.gz
/usr/share/man/man1/macs2_refinepeak.1.gz

Changelog

2018-10-22 - Michael R. Crusoe <michael.crusoe@gmail.com>
macs (2.1.2.1-1) unstable; urgency=medium
[ Jelmer Vernooń≥ ]
* Use secure URI in Homepage field.
[ Michael R. Crusoe ]
* New upstream release
* Drop spelling patch (incorporated upstream)
2018-02-19 - Katerina Kalou <aik.kalou@gmail.com>
macs (2.1.1.20160309-2) unstable; urgency=medium
* Team upload.
[ Andreas Tille ]
* debian/upstream/metadata:
- UTF-8 notation of names rather than TeX syntax
- added eprint
* d/rules: Do not parse d/changelog
* Remove Tim Booth and H. Soon Gweon from Uploaders
* Standards-Version: 4.1.3
* hardening=+all
* debhelper 11
[ Katerina Kalou ]
* Add autopkgtest (Closes: #879622)
2016-05-13 - Michael R. Crusoe <michael.crusoe@gmail.com>
macs (2.1.1.20160309-1) unstable; urgency=medium
* New upstream release.
* Bump Standards-Version to 3.9.8
* Refresh & re-submit spelling patch
* enable "bindnow" linker flag hardening
2016-03-05 - Michael R. Crusoe <crusoe@ucdavis.edu>
macs (2.1.1.20160226-1) unstable; urgency=medium
* New upstream release
2016-02-01 - Michael R. Crusoe <crusoe@ucdavis.edu>
macs (2.1.0.20151222-1) unstable; urgency=medium
* New upstream release
* A couple more spelling fixes & updated VCS URLs.
2015-10-03 - Michael R. Crusoe <crusoe@ucdavis.edu>
macs (2.1.0.20150731-1) unstable; urgency=low
* debian/watch: now released via PyPI.
* debian/rules:
- 2.1.0 uses a single binary with subcommands, manpages have been updated
- use pybuild
* debian/control:
- `cme fix dpkg-control` reformating
- added myself to uploaders
- upgrades to standards-version 3.9.6,dropped deprecated DM-Upload-Allowed
- now managed via git; VCS URLs updated
* debian/upstream/metadata: added paper
* debian/upstream/signing-key.asc: upstream now signs their releases
* debian/copyright:
- upstream is now BSD-3-clause
- MACS2/khash.h is Expat licensed
* debian/lintian-overrides: silence warning about line breaks
* debian/manpages: install manual pages using dh_installman
* debian/patches/{series,spelling}: fix two spelling errors from upstream
* debian/docs: README is now README.rst
2012-12-19 - Andreas Tille <tille@debian.org>
macs (2.0.9.1-1) unstable; urgency=low
* Initial upload to Debian (Closes: #696331)
* debian/control:
- Adaptations to Debian Med team maintenance
- X-Python-Version: >=2.7 because build fails
for Python 2.6
- Standards-Version: 3.9.4 (no changes needed)
- Priority: optional
* debian/watch: Removed useless comments
* debian/README.*: Removed unused dh-make templates
* debian/copyright: Added some missing information
* debian/rules:
- Removed useless dh-make comment
- use dh_python2
- use help2man to create manpages
* debhelper 9 (control+compat)
2012-01-05 - Tim Booth <tbooth@ceh.ac.uk>
macs (2.0.9.1-1ubuntu3) lucid; urgency=low
* Fix typo in debian/rules
2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com>
macs (2.0.9.1-1ubuntu2) lucid; urgency=low
* Package for PPA
* Packaged from version 2.0.9-1
* Changed debian/rules to override dh_auto_clean to remove *.c files 
2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com>
macs (2.0.9.1-1) unstable; urgency=low
* Initial packaging attempt

See Also

Package Description
macsyfinder_1.0.5-2_all.deb detection of macromolecular systems in protein datasets
mactelnet-client_0.4.4-4_amd64.deb Console tools for telneting and pinging via MAC addresses
mactelnet-server_0.4.4-4_amd64.deb Telnet daemon for accepting connections via MAC addresses
macutils_2.0b3-16+b2_amd64.deb Set of tools to deal with specially encoded Macintosh files
madbomber-data_0.2.5-8_all.deb Datafiles for madbomber
madbomber_0.2.5-8_amd64.deb Kaboom! clone
madison-lite_0.24_all.deb display versions of Debian packages in an archive
madlib-doc_1.3.0-2.1_all.deb mesh adaptation library
madplay_0.15.2b-8.3_amd64.deb MPEG audio player in fixed point
madwimax_0.1.1-1+b2_amd64.deb user-space driver for mWiMAX equipment based on Samsung CMC-730
maelstrom_1.4.3-L3.0.6+main-9_amd64.deb Arcade-style game resembling Asteroids
maffilter-examples_1.3.1+dfsg-1_all.deb process genome alignment in the Multiple Alignment Format (example data)
maffilter_1.3.1+dfsg-1+b1_amd64.deb process genome alignment in the Multiple Alignment Format
mafft_7.407-2_amd64.deb Multiple alignment program for amino acid or nucleotide sequences
magic-wormhole-transit-relay_0.1.2-1_all.deb Transit Relay server for Magic-Wormhole
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