libpbdata-dev_5.3.1+dfsg-2.1_amd64.deb


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Description

libpbdata-dev - tools for handling PacBio sequences (development files)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename libpbdata-dev_5.3.1+dfsg-2.1_amd64.deb
Package name libpbdata-dev
Package version 5.3.1+dfsg
Package release 2.1
Package architecture amd64
Package type deb
Category devel::library libdevel role::devel-lib
Homepage https://github.com/PacificBiosciences/blasr_libcpp
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 196.51 KB
Installed size 1.36 MB
Blasr_libcpp is a library used by blasr and other executables such as
samtoh5, loadPulses for analyzing PacBio sequences. This library contains
three sub-libraries, including pbdata, hdf and alignment.
This package contains the header files and static library for the pbdata
sublibrary.

Alternatives

Package Version Architecture Repository
libpbdata-dev - - -

Requires

Name Value
libpbdata = 5.3.1+dfsg-2.1

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libpbdata-dev_5.3.1+dfsg-2.1_amd64.deb
Source Package pbseqlib

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libpbdata-dev deb package:
    # sudo apt-get install libpbdata-dev

Files

Path
/usr/include/pbseq/pbdata/CCSSequence.hpp
/usr/include/pbseq/pbdata/ChangeListID.hpp
/usr/include/pbseq/pbdata/CommandLineParser.hpp
/usr/include/pbseq/pbdata/Compare4BitCompressed.hpp
/usr/include/pbseq/pbdata/CompressedDNASequence.hpp
/usr/include/pbseq/pbdata/CompressedSequence.hpp
/usr/include/pbseq/pbdata/CompressedSequenceImpl.hpp
/usr/include/pbseq/pbdata/DNASequence.hpp
/usr/include/pbseq/pbdata/Enumerations.h
/usr/include/pbseq/pbdata/FASTAReader.hpp
/usr/include/pbseq/pbdata/FASTASequence.hpp
/usr/include/pbseq/pbdata/FASTQReader.hpp
/usr/include/pbseq/pbdata/FASTQSequence.hpp
/usr/include/pbseq/pbdata/GFFFile.hpp
/usr/include/pbseq/pbdata/LibBlasrConfig.h
/usr/include/pbseq/pbdata/MD5Utils.hpp
/usr/include/pbseq/pbdata/MD5UtilsImpl.hpp
/usr/include/pbseq/pbdata/NucConversion.hpp
/usr/include/pbseq/pbdata/PacBioDefs.h
/usr/include/pbseq/pbdata/PackedDNASequence.hpp
/usr/include/pbseq/pbdata/PrettyException.hpp
/usr/include/pbseq/pbdata/ReverseCompressIndex.hpp
/usr/include/pbseq/pbdata/SMRTSequence.hpp
/usr/include/pbseq/pbdata/SeqUtils.hpp
/usr/include/pbseq/pbdata/SeqUtilsImpl.hpp
/usr/include/pbseq/pbdata/StringUtils.hpp
/usr/include/pbseq/pbdata/Types.h
/usr/include/pbseq/pbdata/VectorUtils.hpp
/usr/include/pbseq/pbdata/defs.h
/usr/include/pbseq/pbdata/utils.hpp
/usr/include/pbseq/pbdata/utilsImpl.hpp
/usr/include/pbseq/pbdata/alignment/CmpAlignment.hpp
/usr/include/pbseq/pbdata/alignment/CmpAlignmentImpl.hpp
/usr/include/pbseq/pbdata/amos/AfgBasWriter.hpp
/usr/include/pbseq/pbdata/loadpulses/MetricField.hpp
/usr/include/pbseq/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp
/usr/include/pbseq/pbdata/matrix/FlatMatrix.hpp
/usr/include/pbseq/pbdata/matrix/FlatMatrixImpl.hpp
/usr/include/pbseq/pbdata/matrix/Matrix.hpp
/usr/include/pbseq/pbdata/matrix/MatrixImpl.hpp
/usr/include/pbseq/pbdata/metagenome/FindRandomSequence.hpp
/usr/include/pbseq/pbdata/metagenome/SequenceIndexDatabase.hpp
/usr/include/pbseq/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp
/usr/include/pbseq/pbdata/metagenome/TitleTable.hpp
/usr/include/pbseq/pbdata/qvs/QualityTransform.hpp
/usr/include/pbseq/pbdata/qvs/QualityValue.hpp
/usr/include/pbseq/pbdata/qvs/QualityValueVector.hpp
/usr/include/pbseq/pbdata/qvs/QualityValueVectorImpl.hpp
/usr/include/pbseq/pbdata/reads/AcqParams.hpp
/usr/include/pbseq/pbdata/reads/BaseFile.hpp
/usr/include/pbseq/pbdata/reads/BaseFileImpl.hpp
/usr/include/pbseq/pbdata/reads/HoleXY.hpp
/usr/include/pbseq/pbdata/reads/PulseBaseCommon.hpp
/usr/include/pbseq/pbdata/reads/PulseFile.hpp
/usr/include/pbseq/pbdata/reads/PulseFileImpl.hpp
/usr/include/pbseq/pbdata/reads/ReadInterval.hpp
/usr/include/pbseq/pbdata/reads/ReadType.hpp
/usr/include/pbseq/pbdata/reads/RegionAnnotation.hpp
/usr/include/pbseq/pbdata/reads/RegionAnnotations.hpp
/usr/include/pbseq/pbdata/reads/RegionTable.hpp
/usr/include/pbseq/pbdata/reads/RegionTypeMap.hpp
/usr/include/pbseq/pbdata/reads/ScanData.hpp
/usr/include/pbseq/pbdata/reads/ZMWGroupEntry.hpp
/usr/include/pbseq/pbdata/saf/AlnGroup.hpp
/usr/include/pbseq/pbdata/saf/AlnInfo.hpp
/usr/include/pbseq/pbdata/saf/MovieInfo.hpp
/usr/include/pbseq/pbdata/saf/RefGroup.hpp
/usr/include/pbseq/pbdata/saf/RefInfo.hpp
/usr/include/pbseq/pbdata/sam/AlignmentSet.hpp
/usr/include/pbseq/pbdata/sam/AlignmentSetImpl.hpp
/usr/include/pbseq/pbdata/sam/CigarString.h
/usr/include/pbseq/pbdata/sam/ReadGroup.hpp
/usr/include/pbseq/pbdata/sam/ReferenceSequence.hpp
/usr/include/pbseq/pbdata/sam/SAMAlignment.hpp
/usr/include/pbseq/pbdata/sam/SAMFlag.h
/usr/include/pbseq/pbdata/sam/SAMHeader.hpp
/usr/include/pbseq/pbdata/sam/SAMKeywordValuePair.hpp
/usr/include/pbseq/pbdata/sam/SAMKeywordValuePairImpl.hpp
/usr/include/pbseq/pbdata/sam/SAMReader.hpp
/usr/include/pbseq/pbdata/sam/SAMReaderImpl.hpp
/usr/include/pbseq/pbdata/utils/BitUtils.hpp
/usr/include/pbseq/pbdata/utils/SMRTReadUtils.hpp
/usr/include/pbseq/pbdata/utils/SMRTTitle.hpp
/usr/include/pbseq/pbdata/utils/TimeUtils.hpp
/usr/lib/x86_64-linux-gnu/libpbdata.a
/usr/share/doc/libpbdata-dev/changelog.Debian.gz
/usr/share/doc/libpbdata-dev/copyright

Changelog

2019-02-06 - Adrian Bunk <bunk@debian.org>
pbseqlib (5.3.1+dfsg-2.1) unstable; urgency=medium
* Non-maintainer upload.
* Remove manual dependencies on libpbbam, version build
dependency on libpbbam-dev to ensure a proper dependency
is generated.
2019-01-28 - Andreas Tille <tille@debian.org>
pbseqlib (5.3.1+dfsg-2) unstable; urgency=medium
* Team upload.
* Install pkg-config file for libblasr
* debhelper 12
* Standards-Version: 4.3.0
* Secure URI in copyright format
2018-07-02 - Andreas Tille <tille@debian.org>
pbseqlib (5.3.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* d/watch: Upstream has tagged a release so use proper watch file
* Exclude binary tools from upstream tarball
* Set PREFIX_INC=.. to make sure header files will be found
* cme fix dpkg-control
- Point Vcs-fields to Salsa
- Standards-Version: 4.1.4
- Sequence of fields
- Formatting
* check DEB_BUILD_OPTIONS in auto_test override
* Remove unused lintian override
* hardening=+all
[ Gilles Filippini ]
* Fix build against recent Hdf5 lib
2017-11-09 - Afif Elghraoui <afif@debian.org>
pbseqlib (0~20161219-2) unstable; urgency=medium
* Add support for HDF5 1.10.1
Thanks to Gilles Filippini for the patches (Closes: #880805)
* Bump Standards-Version to 4.1.1
* Update copyright year
* Handle nocheck build profile
2016-12-20 - Afif Elghraoui <afif@debian.org>
pbseqlib (0~20161219-1) unstable; urgency=medium
* Imported Upstream version 0~20161219
(upstream git 61c6ab0)
* Update to debhelper compat 10
2016-12-17 - Afif Elghraoui <afif@debian.org>
pbseqlib (0~20160705-2) unstable; urgency=medium
* Build with pbbam
2016-10-23 - Afif Elghraoui <afif@debian.org>
pbseqlib (0~20160705-1) unstable; urgency=medium
* Imported Upstream version 0~20160705
(upstream git 0ae1691)
- Drop patches
- Fix "clean" target
* Move header files to avoid breaking relative paths
* Bump Standards-Version to 3.9.8
* Don't put libpbseq in Metapackages section
* Use encrypted protocols for VCS
* Update email address and copyright years
* Use O3 optimization
* Use dh-exec to handle library installation
* Install libraries to main ldpath and add ld triggers
* Remove unnecessary definition in d/rules
* Remove obsolete lintian overrides
* Add README.source to explain relationship with reverse-dependencies
2015-12-13 - Afif Elghraoui <afif@ghraoui.name>
pbseqlib (0~20151014+gitbe5d1bf-2) unstable; urgency=medium
* Add package interdependencies.
* Correct the dependencies of libpbseq-dev
* Set up some build-time tests
* Fix build on 32-bit architectures (Closes: #807583)
* Drop symlinks from -dev packages
2015-11-16 - Afif Elghraoui <afif@ghraoui.name>
pbseqlib (0~20151014+gitbe5d1bf-1) unstable; urgency=medium
* Initial release (Closes: #798218)

See Also

Package Description
libpbdata_5.3.1+dfsg-2.1_amd64.deb tools for handling PacBio sequences
libpbihdf-dev_5.3.1+dfsg-2.1_amd64.deb tools for handling PacBio hdf5 files (development files)
libpbihdf_5.3.1+dfsg-2.1_amd64.deb tools for handling PacBio hdf5 files
libpbkdf2-tiny-perl_0.005-2_all.deb Minimalist PBKDF2 (RFC 2898) with HMAC-SHA1 or HMAC-SHA2
libpbseq-dev_5.3.1+dfsg-2.1_all.deb library for analyzing PacBio sequencing data (development files)
libpbseq_5.3.1+dfsg-2.1_all.deb library for analyzing PacBio sequencing data
libpcap-dev_1.8.1-6_amd64.deb development library for libpcap (transitional package)
libpcap0.8-dev_1.8.1-6_amd64.deb development library and header files for libpcap0.8
libpcap0.8_1.8.1-6_amd64.deb system interface for user-level packet capture
libpcaudio-dev_1.1-3_amd64.deb C API to different audio devices - development files
libpcaudio0_1.1-3_amd64.deb C API to different audio devices - shared library
libpcc-dev_1.2.0~DEVEL+20180604-2.1_amd64.deb Portable C Compiler (development files)
libpcg-cpp-dev_0.98.1-2_all.deb compile-time library for PCG random number generation
libpci-dev_3.5.2-1_amd64.deb Linux PCI Utilities (development files)
libpci3_3.5.2-1_amd64.deb Linux PCI Utilities (shared library)
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