libbiojava4-java-doc_4.2.12+dfsg-2_all.deb


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Description

libbiojava4-java-doc - [Biology] Documentation for BioJava

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename libbiojava4-java-doc_4.2.12+dfsg-2_all.deb
Package name libbiojava4-java-doc
Package version 4.2.12+dfsg
Package release 2
Package architecture all
Package type deb
Category doc
Homepage http://www.biojava.org
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 1.87 MB
Installed size 42.43 MB
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data.
This package contains the HTML documentation describing the API of BioJava
which was generated automatically by JavaDoc.

Alternatives

Package Version Architecture Repository
libbiojava4-java-doc_4.2.12+dfsg-2_all.deb 4.2.12+dfsg all Debian Main
libbiojava4-java-doc - - -

Requires

Name Value
default-jdk-doc -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package libbiojava4-java-doc_4.2.12+dfsg-2_all.deb
Source Package biojava4-live

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbiojava4-java-doc deb package:
    # sudo apt-get install libbiojava4-java-doc

Files

Path
/usr/share/doc-base/biojava4
/usr/share/doc/libbiojava4-java-doc/changelog.Debian.gz
/usr/share/doc/libbiojava4-java-doc/copyright
/usr/share/doc/libbiojava4-java/api/allclasses-index.html
/usr/share/doc/libbiojava4-java/api/allclasses.html
/usr/share/doc/libbiojava4-java/api/allpackages-index.html
/usr/share/doc/libbiojava4-java/api/constant-values.html
/usr/share/doc/libbiojava4-java/api/deprecated-list.html
/usr/share/doc/libbiojava4-java/api/element-list.gz
/usr/share/doc/libbiojava4-java/api/help-doc.html
/usr/share/doc/libbiojava4-java/api/index-all.html
/usr/share/doc/libbiojava4-java/api/index.html
/usr/share/doc/libbiojava4-java/api/member-search-index.js
/usr/share/doc/libbiojava4-java/api/member-search-index.zip
/usr/share/doc/libbiojava4-java/api/overview-summary.html
/usr/share/doc/libbiojava4-java/api/overview-tree.html
/usr/share/doc/libbiojava4-java/api/package-search-index.js
/usr/share/doc/libbiojava4-java/api/package-search-index.zip
/usr/share/doc/libbiojava4-java/api/script.js
/usr/share/doc/libbiojava4-java/api/search.js
/usr/share/doc/libbiojava4-java/api/serialized-form.html
/usr/share/doc/libbiojava4-java/api/stylesheet.css
/usr/share/doc/libbiojava4-java/api/type-search-index.js
/usr/share/doc/libbiojava4-java/api/type-search-index.zip
/usr/share/doc/libbiojava4-java/api/jquery/jquery-3.3.1.js
/usr/share/doc/libbiojava4-java/api/jquery/jquery-migrate-3.0.1.js
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.css
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.js
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.min.css
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.min.js
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.structure.css
/usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.structure.min.css
/usr/share/doc/libbiojava4-java/api/jquery/external/jquery/jquery.js
/usr/share/doc/libbiojava4-java/api/jquery/images/ui-bg_flat_0_aaaaaa_40x100.png
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/usr/share/doc/libbiojava4-java/api/jquery/images/ui-bg_glass_75_e6e6e6_1x400.png
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/usr/share/doc/libbiojava4-java/api/jquery/images/ui-icons_cd0a0a_256x240.png
/usr/share/doc/libbiojava4-java/api/jquery/jszip-utils/dist/jszip-utils-ie.js
/usr/share/doc/libbiojava4-java/api/jquery/jszip-utils/dist/jszip-utils-ie.min.js
/usr/share/doc/libbiojava4-java/api/jquery/jszip-utils/dist/jszip-utils.js
/usr/share/doc/libbiojava4-java/api/jquery/jszip-utils/dist/jszip-utils.min.js
/usr/share/doc/libbiojava4-java/api/jquery/jszip/dist/jszip.js
/usr/share/doc/libbiojava4-java/api/jquery/jszip/dist/jszip.min.js
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/CommandPrompt.PropertyName.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/CommandPrompt.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/Constraints.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/IPeptideProperties.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/PeptideProperties.SingleLetterAACode.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/PeptideProperties.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/Utils.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.ATTRIBUTE.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.DISTRIBUTION.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.GROUPING.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.TRANSITION.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/IProfeatProperties.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/ProfeatProperties.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/ProfeatPropertiesImpl.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Charge.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Hydrophobicity.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2NormalizedVanDerWaalsVolume.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarity.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2Polarizability.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2SecondaryStructure.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convert2SolventAccessibility.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/Convertor.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/profeat/convertor/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/AminoAcidComposition.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/CaseFreeAminoAcidCompoundSet.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/Element.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/ElementTable.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/Isotope.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/ModifiedAminoAcidCompoundSet.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/Name2Count.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/SchemaGenerator.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/aaproperties/xml/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/Alignments.PairInProfileScorerType.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/Alignments.PairwiseSequenceAlignerType.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/Alignments.PairwiseSequenceScorerType.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/Alignments.ProfileProfileAlignerType.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/Alignments.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/FractionalIdentityInProfileScorer.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/FractionalIdentityScorer.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/FractionalSimilarityInProfileScorer.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/GuideTree.Node.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/GuideTree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/NeedlemanWunsch.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/SimpleGapPenalty.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/SimpleProfileProfileAligner.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/SmithWaterman.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/StandardRescoreRefiner.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/SubstitutionMatrixScorer.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/StockholmFileAnnotation.StockholmFileAnnotationReference.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/StockholmFileAnnotation.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/StockholmFileParser.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/StockholmStructure.DatabaseReference.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/StockholmStructure.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/io/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AlignerHelper.Anchor.QueryIndexComparator.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AlignerHelper.Anchor.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AlignerHelper.Cut.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AlignerHelper.Subproblem.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AlignerHelper.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/AnchoredPairwiseSequenceAligner.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/routines/GuanUberbacher.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/template/CallablePairwiseSequenceAligner.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/template/CallablePairwiseSequenceScorer.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/template/CallableProfileProfileAligner.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/template/ProfileProfileScorer.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/alignment/template/RescoreRefiner.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/alignment/template/SequencePair.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/alignment/template/SubstitutionMatrix.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/alignment/template/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/alignment/template/package-tree.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/exceptions/CompoundNotFoundException.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/exceptions/Messages.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/exceptions/ParserException.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/search/io/SearchIO.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/search/io/blast/BlastTabularParser.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/search/io/blast/BlastXMLParser.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/search/io/blast/package-summary.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/search/io/blast/package-tree.html
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/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/BasicSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/CDSComparator.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/CDSSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/ChromosomeSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/DNASequence.DNAType.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/DNASequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/DataSource.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/ExonComparator.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/ExonSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/GeneSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/IntronSequence.html
/usr/share/doc/libbiojava4-java/api/org/biojava/nbio/core/sequence/MultipleSequenceAlignment.html
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Changelog

2019-01-18 - Michael R. Crusoe <michael.crusoe@gmail.com>
biojava4-live (4.2.12+dfsg-2) unstable; urgency=medium
* Team upload.
* Switch to libnetx-java from icedtea-netx and downgrade to a Suggests.
It is only needed by biojava-structure-gui for one operation, which is
done by reflection.
* Replace embedded copy of JavaScript libraries with symlinks to the
dependency of default-jdk-doc.
* debian/copyright: added explanation for repacked upstream tarball
2019-01-14 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.12+dfsg-1) unstable; urgency=medium
* Team upload.
[ Jelmer Vernooń≥ ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
[ tony mancill ]
* Add build-dep on libjaxb-api-java and libjaxb-java
* Add jaxb-api and jaxb-impl JARs to classpaths in debian/build.xml
Closes: #917655, #917667
* Drop --add-modules java.se.ee from javadoc task
2018-02-10 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.11+dfsg-1) unstable; urgency=medium
* New upstream release
d/control: move standards to 4.1.3
2017-09-11 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-2) unstable; urgency=medium
* Fix openjdk 1.8/1.9 compilation/testing (Closes: #875334).
* d/control: switch policy to 4.0.0
2017-05-15 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.7+dfsg-1) unstable; urgency=medium
* New upstream release
2016-12-23 - Andreas Tille <tille@debian.org>
biojava4-live (4.2.5+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
Closes: #846581
* Moved packaging from SVN to Git
2016-12-20 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-2) unstable; urgency=medium
* d/control: add jgrapht as required dependency instead of suggests
(Closes: #848768)
2016-12-05 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.2.4+dfsg-1) unstable; urgency=medium
*  New upstream release
2016-11-24 - Andreas Tille <tille@debian.org>
biojava4-live (4.1.0+dfsg-4) unstable; urgency=medium
* Team upload.
* d/rules: export LC_ALL=C.UTF-8
* Fix clean target
* d/watch: do not report beta versions
* d/rules: tolerate test failures of biojava-core which happens in stretch
sbuild environments for no obvious reasons
Closes: #843712
* cme fix dpkg-control
* debhelper 10
2015-08-17 - Olivier Sallou <osallou@debian.org>
biojava4-live (4.1.0+dfsg-3) unstable; urgency=medium
* Fix FTBS unmappable characters (Closes: #795849).

See Also

Package Description
libbiojava4-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (default version)
libbiojava4.0-java_4.2.12+dfsg-2_all.deb Java API to biological data and applications (version 4)
libbiometric-dev_0.9.61-2_amd64.deb Biometric Identification DRIVER API - development files
libbiometric0_0.9.61-2_amd64.deb Biometric Identification library
libbioparser-dev_1.2.1-1_all.deb library for parsing several formats in bioinformatics
libbiosig-dev_1.9.3-2_amd64.deb I/O library for biomedical data - development files
libbiosig2_1.9.3-2_amd64.deb I/O library for biomedical data - dynamic library
libbison-dev_3.3.2.dfsg-1_amd64.deb YACC-compatible parser generator - development library
libbit-vector-minimal-perl_1.3-5_all.deb object-oriented wrapper around vec()
libbit-vector-perl_7.4-1+b5_amd64.deb Perl module for bit vectors and more
libbitmask-dev_2.0-3_amd64.deb header files and docs for libbitmask
libbitmask1_2.0-3_amd64.deb supports multi-word bitmask operations
libbitstream-dev_1.5-1_all.deb C headers giving access to binary streams like MPEG or DVB
libbitstring-ocaml-dev_2.0.4-2+b2_amd64.deb Erlang-style bitstrings for OCaml (development files)
libbitstring-ocaml_2.0.4-2+b2_amd64.deb Erlang-style bitstrings for OCaml (runtime)
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