grabix_0.1.7-1_amd64.deb


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Description

grabix - wee tool for random access into BGZF files

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main amd64
Package filename grabix_0.1.7-1_amd64.deb
Package name grabix
Package version 0.1.7
Package release 1
Package architecture amd64
Package type deb
Category science
Homepage https://github.com/arq5x/grabix
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 14.50 KB
Installed size 56.00 KB
In biomedical research it is increasing practice to study
the genetic basis of disease. This now frequently comprises
the sequencing of human sequences. The output of the machine
however is redundant, and the real sequence is the best
sequence to explain the redundancy. The exchange of data
happens only with compressed files - to huge and redundant
to perform otherwise. One should avoid uncompression whenever
possible.
grabix leverages the fantastic BGZF library of the samtools
package to provide random access into text files that have
been compressed with bgzip. grabix creates it's own index
(.gbi) of the bgzipped file. Once indexed, one can extract
arbitrary lines from the file with the grab command. Or
choose random lines with the, well, random command.

Alternatives

Package Version Architecture Repository
grabix - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.3.1
libstdc++6 >= 5.2
tabix -
zlib1g >= 1:1.2.0

Download

Type URL
Mirror ftp.br.debian.org
Binary Package grabix_0.1.7-1_amd64.deb
Source Package grabix

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install grabix deb package:
    # sudo apt-get install grabix

Files

Path
/usr/bin/grabix
/usr/share/doc/grabix/README.Debian
/usr/share/doc/grabix/README.md
/usr/share/doc/grabix/changelog.Debian.gz
/usr/share/doc/grabix/copyright
/usr/share/doc/grabix/run-unit-test
/usr/share/doc/grabix/examples/testdata/get
/usr/share/doc/grabix/examples/testdata/test.sh
/usr/share/doc/grabix/examples/tests/make-test-fastq.py
/usr/share/doc/grabix/examples/tests/test-fastq.py
/usr/share/man/man1/grabix.1.gz

Changelog

2018-10-28 - Andreas Tille <tille@debian.org>
grabix (0.1.7-1) unstable; urgency=medium
* Team upload.
* Fix watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/control
* Remove trailing whitespace in debian/copyright
* Remove trailing whitespace in debian/rules
2013-07-18 - Steffen Moeller <moeller@debian.org>
grabix (0.1.6+git20171023-1) unstable; urgency=low
[ Steffen Moeller ]
* Initial release (Closes: #897037).
[ Andreas Tille ]
* debhelper 10
* Moved packaging from SVN to Git

See Also

Package Description
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grace_5.1.25-6_amd64.deb XY graphing and plotting tool
gradle-apt-plugin_0.10-1_all.deb Gradle plugin to use Java annotation processors
gradle-completion_1.3.1-1_all.deb Bash and Zsh completion support for Gradle
gradle-debian-helper_2.0.2_all.deb Helper tools for building Debian packages with Gradle
gradle-doc_4.4.1-6_all.deb Powerful build system for the JVM - Documentations
gradle-ice-builder-plugin_1.4.5-1_all.deb Gradle plug-in for developing Ice applications in Java
gradle-plugin-protobuf_0.9.2-1_all.deb Protobuf Plugin for Gradle
gradle-propdeps-plugin_0.0.7-3_all.deb Gradle plugin enhancing the Maven integration
gradle_4.4.1-6_all.deb Powerful build system for the JVM
gradm2_3.1~201709030627-1_amd64.deb Administration program for the grsecurity2 RBAC based ACL system
grads_2.2.1-1+b1_amd64.deb Grid Analysis and Display System for earth science data
grafx2_2.6-2_amd64.deb ultimate 256-color bitmap paint program
grail-tools_3.1.1-2_amd64.deb Gesture Recognition And Instantiation Library - test tools
gramadoir_0.7-4_all.deb Irish language grammar checker (integration scripts)
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